Correction in limiric core to input resolution as parameter for limir…

…ic calculation
AlicenJoyHenning · Sep 1, 2024 · 70ab037 · 70ab037
1 parent 60a33a8
commit 70ab037
Show file tree

Hide file tree

Showing 2 changed files with 15 additions and 0 deletions.
diff --git a/.Rhistory b/.Rhistory
@@ -11,3 +11,17 @@ usethis::use_github_action("check-standard")
 devtools::build()
 usethis::use_news_md()
 usethis::use_cran_comments()
+packages <- c("cowplot", "devtools", "dplyr", "ggplot2", "Matrix", "png", "Seurat", "SoupX")
+for (pkg in packages) {
+if (!requireNamespace(pkg, quietly = TRUE)) {
+install.packages(pkg)
+}
+}
+install.packages("ks")
+library(ks)
+install.packages("mclust")
+install.packages("mclust")
+library(mclust)
+install.packages("dplyr")
+install.packages("dplyr")
+library(dplyr)
diff --git a/R/limiric_core.R b/R/limiric_core.R
@@ -338,6 +338,7 @@ limiric_core <- function(
 
   limiric_output <- limiric_calculation(organism = organism,
                                   Seurat = Seurat,
+                                  resolution = resolution,
                                   annotations = annotations,
                                   initial_cells = initial_cells,
                                   project_name = project_name,