Edits to file structure

AlicenJoyHenning · Aug 13, 2024 · 5ae45dc · 5ae45dc
1 parent 6a06ef3
commit 5ae45dc
Show file tree

Hide file tree

Showing 23 changed files with 6 additions and 464 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -6,5 +6,4 @@
 ^Thumbs\.db$
 ^README\.md$
 ^LICENSE\.md$
-^vignettes$
 ^\.github$
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -39,9 +39,12 @@ jobs:
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
-      - name: Install CRAN and GitHub dependencies
+      - name: Install CRAN dependencies
+        run: |
+          R -e "install.packages('devtools', repos='https://cloud.r-project.org')"
+
+      - name: Install GitHub dependencies
         run: |
-          R -e "install.packages('devtools')"
           R -e "devtools::install_github('powellgenomicslab/DropletQC')"
           R -e "devtools::install_deps(dependencies = TRUE)"
 

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -14,7 +14,6 @@ Depends:
 LazyData: true
 Imports: 
     cowplot,
-    devtools,
     dplyr,
     DropletQC,
     ggplot2,
@@ -27,5 +26,6 @@ Remotes:
     powellgenomicslab/DropletQC@main
 Suggests: 
     knitr,
+    devtools,
     rmarkdown
 VignetteBuilder: knitr
diff --git a/NAMESPACE b/NAMESPACE
@@ -2,7 +2,6 @@
 
 export(limiric)
 export(limiricCore)
-import(devtools)
 import(DropletQC)
 import(Matrix)
 import(Seurat)

diff --git a/doc/Intro_to_limiric.R b/doc/Intro_to_limiric.R
diff --git a/doc/Intro_to_limiric.Rmd b/doc/Intro_to_limiric.Rmd