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Update limiric_core.R
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AlicenJoyHenning authored Aug 18, 2024
1 parent 29511b2 commit 13b2fee
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions R/limiric_core.R
Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@ limiric_core <- function(

if (soupx) {

cat("\u2714 Beginning SoupX correction...\n")
cat("\u2714 Beginning SoupX correction...\n")

# Use the soupx_calculation() function to run SoupX ambient RNA correction
Seurat <- soupx_calculation(raw_path = raw_path,
Expand Down Expand Up @@ -327,7 +327,7 @@ limiric_core <- function(
initial_cells <- length(Cells(Seurat))

# Use the limiric_calculation() function to identify damaged cells
cat("\n Identifying damaged cells")

limiric_output <- limiric_calculation(organism = organism,
Seurat = Seurat,
annotations = annotations,
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