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Run real permutation test for GSEA

Status: Open.

#176 In AlexsLemonade/scpca-paper-figures;

· sjspielman opened on Feb 27, 2025

Regenerate GSEA notebooks

Status: Open.

#174 In AlexsLemonade/scpca-paper-figures;

· sjspielman opened on Feb 26, 2025

Add notebook for over-representation analysis

Status: Open.

#169 In AlexsLemonade/scpca-paper-figures;

· sjspielman opened on Feb 25, 2025

Run ESTMATE on a few more ScPCA projects

Status: Open.

#165 In AlexsLemonade/scpca-paper-figures;

· sjspielman opened on Feb 25, 2025

Outline main and supplemental figures for consensus cell typing

Status: Open.

#161 In AlexsLemonade/scpca-paper-figures;

· allyhawkins opened on Feb 21, 2025

Consider how to assess potential structure in residuals

Status: Open.

#155 In AlexsLemonade/scpca-paper-figures;

· sjspielman opened on Feb 14, 2025

Test deconvolution methods: CIBERSORTx

Status: Open.

#94 In AlexsLemonade/scpca-paper-figures;

· sjspielman opened on Dec 17, 2024

Obtain CIBERSORTx script

Status: Open.

#95 In AlexsLemonade/scpca-paper-figures;

· sjspielman opened on Dec 17, 2024

Make README more public-facing before going public

Status: Open.

#33 In AlexsLemonade/scpca-paper-figures;

· sjspielman opened on Jan 18, 2024

Assign MONDO ontology terms to diagnosis groups

Status: Open.

#20 In AlexsLemonade/scpca-paper-figures;

· allyhawkins opened on Jan 9, 2024