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Commits on Oct 12, 2021

• Offline solution: vignette build, examples, tests

  Al-Murphy

  committed
  4f08db6

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Commits on Oct 3, 2021

• Fix vcf2df sapply->vapply. Ensure vcf cols have samplee_Id suffixes removed

  bschilder

  committed
  801e327

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• make Rsamtools and seqminer suggests not deps

  bschilder

  committed
  d8bffbd

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• Fixed handling of vcf/gz/bgz

  bschilder

  committed
  9ae021f

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• Enable tabix-indexing for tabular output

  bschilder

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  8ab84dc

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Commits on Sep 2, 2021

• liftover functionality added

  Al-Murphy

  committed
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Commits on Aug 27, 2021

• Replace get_genome_build export with get_genome_builds. Various effective sample size formulas. Bug fix in read_vcf. Remove unused args

  bschilder

  committed
  3fc1ce6

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Commits on Aug 18, 2021

• enhancements a0/a1, multi-SNP, handle df dt

  Al-Murphy

  committed
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Commits on Jul 20, 2021

• allele flip & manuscript features

  Al-Murphy

  committed
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Commits on Jul 16, 2021

• Fix BicCheck errors/warnings; Enable exporting to LDSC format

  bschilder

  committed
  8b54b53

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Commits on Jul 14, 2021

• @export and add @examples for: download_vcf, read_sumstats, write_sumstats

  bschilder

  committed
  8760c63

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• Add back in data(dataset) syntax to avoid failing during check

  bschilder

  committed
  f5afe0c

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Commits on Jul 13, 2021

• Separate download_vcf function; account to CHR as characters in conversion and sorting; Improve reporting with formatC; drop rows with N as NA;

  bschilder

  committed
  a7764e3

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• Merge branch 'bschilder_dev' of https://github.com/neurogenomics/MungeSumstats into bschilder_dev

  bschilder

  committed
  8dd08fc

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• Extract ieugwasr functions

  bschilder

  committed
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• Infer genome build

  Al-Murphy

  committed
  2861436

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Commits on Jul 11, 2021

• Complete import_sumstats

  bschilder

  committed
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Commits on Jul 10, 2021

• find_sumstats new func

  bschilder

  committed
  c3237ec

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Commits on Jul 9, 2021

• Add alternative means of getting sample ID from VCF

  bschilder

  committed
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Commits on Apr 27, 2021

• Move unnecessary dependencies to suggest

  Al-Murphy

  committed
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Commits on Apr 26, 2021

• Add S4 Vectors Dependency combineRows

  Al-Murphy

  committed
  5109b15

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• Move dependencies for ref genomes to suggests

  Al-Murphy

  committed
  fbf9a5f

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Commits on Apr 25, 2021

• Deal with non-uniform SNP ID's

  Al-Murphy

  committed
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Commits on Apr 22, 2021

• Updates based on Bioconductor review

  Al-Murphy

  committed
  404e4ef

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Commits on Apr 19, 2021

• Additional checks & tests - allele flip, strand ambig, non-biallelic

  Al-Murphy

  committed
  29d0714

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Commits on Apr 16, 2021

• Deal with missing A1/A2 alleles

  Al-Murphy

  committed
  3b1dd41

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Commits on Apr 12, 2021

• All tests added

  Al-Murphy

  committed
  a057e54

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Commits on Apr 8, 2021

• Additional checks added

  Al-Murphy

  committed
  c6749a4

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Commits on Mar 31, 2021

• Split format sumstats into check functions

  Al-Murphy

  committed
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Commits on Mar 30, 2021

• Initial commit

  Al-Murphy

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