adding --interactive to multiqc call in ag_gbs_qc_prism.sh

adding --interactive to multiqc call in ag_gbs_qc_prism.sh to force rendering of interactive report.
AgResearch · Jul 26, 2023 · eb77317 · eb77317
1 parent cdf1771
commit eb77317
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ag_gbs_qc_prism.sh b/ag_gbs_qc_prism.sh
@@ -929,7 +929,7 @@ function html() {
    # fastqc and multiqc
    mkdir -p $OUT_ROOT/html/multiqc
    rm -rf $OUT_ROOT/html/multiqc/*
-   tardis -d $OUT_ROOT --hpctype local --shell-include-file $OUT_ROOT/multiqc_env.inc  multiqc -i \"multifastqc for $RUN\" -o $OUT_ROOT/html/multiqc $OUT_ROOT/../../illumina/$PLATFORM/$RUN/*/fastqc_run/fastqc
+   tardis -d $OUT_ROOT --hpctype local --shell-include-file $OUT_ROOT/multiqc_env.inc  multiqc --interactive -i \"multifastqc for $RUN\" -o $OUT_ROOT/html/multiqc $OUT_ROOT/../../illumina/$PLATFORM/$RUN/*/fastqc_run/fastqc
 
    cp -pR $OUT_ROOT/../../illumina/$PLATFORM/$RUN/*/fastqc_run/fastqc $OUT_ROOT/html/fastqc