Add support in JAX backend for PEtab v2

[BSnelling]

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[codecov]

Codecov Report

❌ Patch coverage is 20.50000% with 159 lines in your changes missing coverage. Please review.
✅ Project coverage is 46.98%. Comparing base (2d0dd5b) to head (b9af957).

Files with missing lines	Patch %	Lines
python/sdist/amici/jax/petab.py	23.18%	106 Missing ⚠️
python/sdist/amici/sim/jax/__init__.py	9.80%	46 Missing ⚠️
python/sdist/amici/jax/model.py	0.00%	5 Missing ⚠️
python/sdist/amici/_symbolic/de_model.py	50.00%	1 Missing ⚠️
python/sdist/amici/jax/_simulation.py	0.00%	1 Missing ⚠️

❗ There is a different number of reports uploaded between BASE (2d0dd5b) and HEAD (b9af957). Click for more details.

HEAD has 29 uploads less than BASE

Flag	BASE (2d0dd5b)	HEAD (b9af957)
petab	2	1
sbmlsuite-jax	3	0
petab_sciml	1	0
python	26	3
cpp	1	0

Additional details and impacted files

@@             Coverage Diff             @@
##             main    #3115       +/-   ##
===========================================
- Coverage   78.24%   46.98%   -31.27%     
===========================================
  Files         315      316        +1     
  Lines       20482    20597      +115     
  Branches     1484     1483        -1     
===========================================
- Hits        16027     9677     -6350     
- Misses       4447    10813     +6366     
- Partials        8      107       +99     

Flag	Coverage Δ
cpp	?
cpp_python	37.89% <9.00%> (+0.04%)	⬆️
petab	41.27% <20.50%> (-5.29%)	⬇️
petab_sciml	?
python	38.45% <9.00%> (-31.91%)	⬇️
sbmlsuite-jax	?

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
...hon/sdist/amici/importers/petab/_petab_importer.py	52.16% <ø> (-34.63%)	⬇️
...dist/amici/importers/petab/v1/parameter_mapping.py	76.99% <100.00%> (-8.39%)	⬇️
...thon/sdist/amici/importers/petab/v1/sbml_import.py	97.75% <ø> (ø)
python/sdist/amici/jax/ode_export.py	79.68% <ø> (-9.55%)	⬇️
python/sdist/amici/_symbolic/de_model.py	83.63% <50.00%> (-8.30%)	⬇️
python/sdist/amici/jax/_simulation.py	8.69% <0.00%> (-88.37%)	⬇️
python/sdist/amici/jax/model.py	36.00% <0.00%> (-51.50%)	⬇️
python/sdist/amici/sim/jax/__init__.py	9.80% <9.80%> (ø)
python/sdist/amici/jax/petab.py	41.01% <23.18%> (-53.00%)	⬇️

... and 211 files with indirect coverage changes

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Quality Gate failed

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E Reliability Rating on New Code (required ≥ A)

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