PRiMeR

Code for the paper: "Genetics-driven Risk Predictions leveraging the Mendelian Randomization framework" presented at RECOMB 2024 and published in Genome Research

Citation

If you find our code usefull for your work, please cite it as:

@ARTICLE{Sens2024,
  title     = "Genetics-driven risk predictions leveraging the Mendelian
               randomization framework",
  author    = "Sens, Daniel and Shilova, Liubov and Gr{\"a}f, Ludwig and
               Grebenshchikova, Maria and Eskofier, Bjoern M and Casale,
               Francesco Paolo",
  journal   = "Genome Research",
  publisher = "Cold Spring Harbor Laboratory",
  month     =  sep,
  year      =  2024,
  url       = "https://www.genome.org/cgi/doi/10.1101/gr.279252.124"
}

Installation

If you want to run the showcase notebook and adapt the code please run:

git clone https://github.com/AIH-SGML/PRiMeR.git
cd PRiMeR
conda env create --file ./primer.yml
conda activate primer
pip install -e .

Showcase notebook

Check out ./examples/README.md on how to run PRiMeR on your data.

License

This project is licensed under the terms of the GNU General Public License v3.0. See the LICENSE file for details.