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  • Manipal Institute of Applied Physics, MAHE
  • Manipal, India
  • 17:58 (UTC +05:30)
  • LinkedIn in/arpit-kumar-i

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4RP17/README.md

Arpit Kumar

Computational Chemistry · Molecular Physics · FEA, Magnetostatics & Magnetohydrodynamics


About

I'm a physicist moving into computational chemistry. My work connects quantum-chemical calculations with what you can measure in the lab: vibrational spectra, magnetic susceptibility, and transport.

At the continuum scale I work on finite-element analysis (FEA) of magnetostatic fields and magnetohydrodynamics (MHD): how magnetic fields and field gradients act on conducting fluids and dissolved species. Molecular simulation and continuum simulation are two ends of the same problem.

For my B.Sc. (Hons) Physics thesis at Manipal Institute of Applied Physics (minor in Mathematics) I combined three things:

  • DFT (ORCA, r²SCAN-3c / CPCM) on aqueous As(III) and As(V) species
  • Langevin–Lorentz transport modelling
  • FTIR spectroscopy and VSM magnetometry

The goal was to test whether arsenic speciation produces measurable vibrational and magnetic signatures.

Next: a master's in computational molecular science.

Research interests

  • Electronic structure: DFT and composite methods (r²SCAN-3c, PBE0-D4), implicit/explicit solvation, vibrational analysis, magnetic and NMR response properties
  • Molecular simulation: Langevin and Brownian dynamics, classical MD in explicit solvent, diffusion and transport coefficients
  • Spectroscopy–theory correlation: calculated against experimental IR, peak deconvolution, speciation fingerprints
  • FEA and computational electromagnetics: finite-element magnetostatics, field and field-gradient mapping (|B|, B·∇B), mesh-convergence checks against analytical solutions
  • Magnetohydrodynamics (MHD): Lorentz-force-driven flow of electrolytes, Hartmann-type channel flow, coupling between magnetic fields and ion transport
  • CFD: transport and mixing in aqueous media, linking continuum models to molecular-scale diffusion coefficients
  • Cheminformatics and ML for molecules

Featured work

Project What it does Stack
arsenic-speciation-dft-md DFT Opt/Freq of H₃AsO₃, H₂AsO₃⁻, H₂AsO₄⁻ in CPCM water. Calculated vs. experimental IR. Langevin–Lorentz model showing |q|B/ζ ≤ 10⁻⁶ for solvated ions. FTIR and VSM datasets ORCA 6 · Python · NumPy · pandas
FEMM-Data-Plotter Deconvolutes FEMM magnetostatic |B| profiles into expanded form for chosen domains Python · FEMM
VSManalyser Processing of vibrating-sample-magnetometry M–H data Python
Cheminformatics → docking notebooks MolSSI/IQB crash course: molecular representation, BindingDB mining, structure preparation, CNN-scored docking RDKit · pandas · gnina

Studying and building on: gnina (CNN-scored docking) · mols2grid · PyChem-Pro (pure-Python MMFF94 and descriptors) · practical_cheminformatics_tutorials

Toolbox

Quantum chemistry: ORCA (Opt/Freq, CPCM, NMR inputs)
FEA and multiphysics: FEMM (magnetostatics, Lua scripting) · Python post-processing of field data
Simulation and numerics: Python (NumPy, SciPy, pandas, Matplotlib) · Jupyter
Cheminformatics and docking: RDKit · gnina
Data and spectroscopy: OriginPro · FTIR peak fitting · VSM M–H analysis
Currently learning: GROMACS / OpenMM · xTB / CREST · CP2K · Elmer FEM · OpenFOAM (mhdFoam)

Open to

Research internships, collaborations and M.Sc./PhD conversations in computational chemistry, molecular simulation, FEA/MHD modelling and theoretical spectroscopy.

Pinned Loading

  1. FEMM-Data-Plotter FEMM-Data-Plotter Public

    This Python extension program assists in deconvoluting the FEMM Magnetostatic |B| Curve into its expanded form, tailored for specific domains.

    Python 1

  2. practical_cheminformatics_tutorials practical_cheminformatics_tutorials Public

    Forked from PatWalters/practical_cheminformatics_tutorials

    Practical Cheminformatics Tutorials

    Jupyter Notebook 1

  3. arsenic-speciation-dft-md arsenic-speciation-dft-md Public

    DFT (ORCA r2SCAN-3c/CPCM) + Langevin-Lorentz transport modelling + FTIR/VSM data for As(III)/As(V) speciation in water

    Python

  4. gnina gnina Public

    Forked from gnina/gnina

    A deep learning framework for molecular docking

    C++

  5. mols2grid mols2grid Public

    Forked from cbouy/mols2grid

    Interactive molecule viewer for 2D structures

    Python

  6. VSManalyser VSManalyser Public

    Forked from Abhijeetbyte/VSManalyser

    A quick and portable way to analyze vibrating-sample-measurement (VSM) data

    Python