results_summary

1edv · Nov 5, 2021 · 6a71fa0 · 6a71fa0
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diff --git a/...ults_summary/.ipynb_checkpoints/1_generate_performance_metrics_and_plots-checkpoint.ipynb b/...ults_summary/.ipynb_checkpoints/1_generate_performance_metrics_and_plots-checkpoint.ipynb
diff --git a/manuscript_code/model/results_summary/1_generate_performance_metrics_and_plots.ipynb b/manuscript_code/model/results_summary/1_generate_performance_metrics_and_plots.ipynb
diff --git a/...ts_summary/20210811_neutrally_evolved_high_low_Gini_within1.000000_data.txt_gpu_model.csv b/...ts_summary/20210811_neutrally_evolved_high_low_Gini_within1.000000_data.txt_gpu_model.csv
diff --git a/manuscript_code/model/results_summary/Drift_test_gpu_model_defined_media.csv b/manuscript_code/model/results_summary/Drift_test_gpu_model_defined_media.csv
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diff --git a/manuscript_code/model/results_summary/Fig_1b gpu_performance.pdf b/manuscript_code/model/results_summary/Fig_1b gpu_performance.pdf
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diff --git a/manuscript_code/model/results_summary/Native_summary_plot_predicted_vs_measured.pdf b/manuscript_code/model/results_summary/Native_summary_plot_predicted_vs_measured.pdf
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diff --git a/manuscript_code/model/results_summary/Native_test_DanQ_model.csv b/manuscript_code/model/results_summary/Native_test_DanQ_model.csv
diff --git a/manuscript_code/model/results_summary/Native_test_DeepSEA_model.csv b/manuscript_code/model/results_summary/Native_test_DeepSEA_model.csv
diff --git a/manuscript_code/model/results_summary/Native_test_gpu_model_defined_media.csv b/manuscript_code/model/results_summary/Native_test_gpu_model_defined_media.csv
diff --git a/manuscript_code/model/results_summary/Native_testdata_defined_media.csv b/manuscript_code/model/results_summary/Native_testdata_defined_media.csv
diff --git a/manuscript_code/model/results_summary/README.md b/manuscript_code/model/results_summary/README.md
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-The notebook in this directory (`1_generate_performance_metrics_and_plots.ipynb`) reproduces the prediction performance scatterplots that summarize the performance of various models used in the manuscript. It also contains the saved prediction tables for each model including the benchmarking models. Please use the individual model directories to generate prediction tables from scratch using the saved models and for more details.
+The notebook in this directory (`1_generate_performance_metrics_and_plots.ipynb`) reproduces the prediction performance scatterplots that summarize the performance of various models used in the manuscript. It also contains the saved prediction tables for each model including the benchmarking models. Please use the individual model directories to generate prediction tables from scratch using the saved models and for more details.
diff --git a/manuscript_code/model/results_summary/Random_summary_plot_predicted_vs_measured.pdf b/manuscript_code/model/results_summary/Random_summary_plot_predicted_vs_measured.pdf
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diff --git a/manuscript_code/model/results_summary/Random_test_DanQ_model.csv b/manuscript_code/model/results_summary/Random_test_DanQ_model.csv
diff --git a/manuscript_code/model/results_summary/Random_test_DeepAtt_model.csv b/manuscript_code/model/results_summary/Random_test_DeepAtt_model.csv
diff --git a/manuscript_code/model/results_summary/Random_test_DeepSEA_model.csv b/manuscript_code/model/results_summary/Random_test_DeepSEA_model.csv
diff --git a/manuscript_code/model/results_summary/Random_test_gpu_model.csv b/manuscript_code/model/results_summary/Random_test_gpu_model.csv
diff --git a/manuscript_code/model/results_summary/Random_test_gpu_model_defined_media.csv b/manuscript_code/model/results_summary/Random_test_gpu_model_defined_media.csv
diff --git a/manuscript_code/model/results_summary/Random_test_tpu_model.csv b/manuscript_code/model/results_summary/Random_test_tpu_model.csv
diff --git a/manuscript_code/model/results_summary/Random_testdata_complex_media.txt b/manuscript_code/model/results_summary/Random_testdata_complex_media.txt
diff --git a/manuscript_code/model/results_summary/Random_testdata_defined_media.csv b/manuscript_code/model/results_summary/Random_testdata_defined_media.csv
diff --git a/manuscript_code/model/results_summary/SSWM_test_gpu_model_defined_media.csv b/manuscript_code/model/results_summary/SSWM_test_gpu_model_defined_media.csv
diff --git a/manuscript_code/model/results_summary/SSWM_test_gpu_model_delta.csv b/manuscript_code/model/results_summary/SSWM_test_gpu_model_delta.csv
diff --git a/manuscript_code/model/results_summary/SSWM_test_gpu_model_delta_defined_media.csv b/manuscript_code/model/results_summary/SSWM_test_gpu_model_delta_defined_media.csv
diff --git a/manuscript_code/model/results_summary/SSWM_testdata_defined_media.csv b/manuscript_code/model/results_summary/SSWM_testdata_defined_media.csv
diff --git a/manuscript_code/model/results_summary/ga_test_gpu_model_defined_media.csv b/manuscript_code/model/results_summary/ga_test_gpu_model_defined_media.csv
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		The notebook in this directory (`1_generate_performance_metrics_and_plots.ipynb`) reproduces the prediction performance scatterplots that summarize the performance of various models used in the manuscript. It also contains the saved prediction tables for each model including the benchmarking models. Please use the individual model directories to generate prediction tables from scratch using the saved models and for more details.
		The notebook in this directory (`1_generate_performance_metrics_and_plots.ipynb`) reproduces the prediction performance scatterplots that summarize the performance of various models used in the manuscript. It also contains the saved prediction tables for each model including the benchmarking models. Please use the individual model directories to generate prediction tables from scratch using the saved models and for more details.