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MMCNN_model.py
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MMCNN_model.py
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from keras.layers import Add
from keras.layers.convolutional import Convolution1D,MaxPooling1D,ZeroPadding1D,AveragePooling1D
from keras.layers.core import Dense,Activation,Flatten
from keras.layers import Input
from keras.layers import Lambda
from keras.layers import Reshape
from keras.layers import AveragePooling1D
from keras.layers import GlobalAveragePooling1D
from keras.layers import Dense
from keras.layers import multiply
import tensorflow as tf
from keras import layers
from keras import Input
from keras.models import Model
from keras import regularizers
from keras.layers import BatchNormalization
from keras import metrics
from keras import losses
from keras.utils import to_categorical
from tensorflow.keras.callbacks import EarlyStopping
from keras.layers import merge
from sklearn.metrics import confusion_matrix
from sklearn.metrics import f1_score
from keras import optimizers
class MMCNN_model():
def __init__(self,
channels = 3,
samples = 1000):
self.channels = 3
self.samples = 1000
self.activation = 'elu'
self.learning_rate = 0.0001
self.dropout = 0.8
self.inception_filters = [16,16,16,16]
# the parameter of the first part :EEG Inception block
self.inception_kernel_length = [[5,10,15,10],
[40,45,50,100],
[60,65,70,100],
[80,85,90,100],
[160,180,200,180],]
self.inception_stride = [2,4,4,4,16]
self.first_maxpooling_size = 4
self.first_maxpooling_stride = 4
# the parameter of the second part :Residual block
self.res_block_filters = [16,16,16]
self.res_block_kernel_stride = [8,7,7,7,6]
# the parameter of the third part :SE block
self.se_block_kernel_stride = 16
self.se_ratio = 8
self.second_maxpooling_size = [4,3,3,3,2]
self.second_maxpooling_stride = [4,3,3,3,2]
self.model = self.build_model(self.channels,self.samples)
adam = optimizers.Adam(lr = self.learning_rate)
self.model.compile(loss=losses.binary_crossentropy,
optimizer = adam,
metrics=['mae',metrics.binary_accuracy])
def build_model(self,channels,samples):
output_conns = []
input_tensor = Input(shape = (samples,channels))
'''
EIN-a
'''
x = self.inception_block(input_tensor,
self.inception_filters,
self.inception_kernel_length[0],
self.inception_stride[0],
self.activation)
x = layers.MaxPooling1D(pool_size = self.first_maxpooling_size,
strides = self.first_maxpooling_stride,
padding = 'same')(x)
x = BatchNormalization()(x)
x = layers.core.Dropout(self.dropout)(x)
x = self.conv_block(x,
self.res_block_filters,
self.res_block_kernel_stride[0],
activation = self.activation)
x = self.squeeze_excitation_layer(x,
self.se_block_kernel_stride,
self.activation,
ratio = self.se_ratio)
x = layers.MaxPooling1D(pool_size = self.second_maxpooling_size[0],
strides = self.second_maxpooling_stride[0],
padding = 'same')(x)
x = layers.core.Flatten()(x)
output_conns.append(x)
'''
EIN-b
'''
y1 = self.inception_block(input_tensor,
self.inception_filters,
self.inception_kernel_length[1],
self.inception_stride[1],
self.activation)
y1 = layers.MaxPooling1D(pool_size = self.first_maxpooling_size,
strides = self.first_maxpooling_stride,
padding = 'same')(y1)
y1 = BatchNormalization()(y1)
y1 = layers.core.Dropout(self.dropout)(y1)
y1 = self.conv_block(y1,
self.res_block_filters,
self.res_block_kernel_stride[1],
self.activation)
y1 = self.squeeze_excitation_layer(y1,
self.se_block_kernel_stride,
self.activation,
ratio = self.se_ratio)
y1 = layers.MaxPooling1D(pool_size = self.second_maxpooling_size[1],
strides = self.second_maxpooling_stride[1],
padding = 'same')(y1)
y1 = layers.core.Flatten()(y1)
output_conns.append(y1)
'''
EIN-c
'''
y2 = self.inception_block(input_tensor,
self.inception_filters,
self.inception_kernel_length[2],
self.inception_stride[2],
self.activation)
y2 = layers.MaxPooling1D(pool_size = self.first_maxpooling_size,
strides = self.first_maxpooling_stride,
padding = 'same')(y2)
y2 = BatchNormalization()(y2)
y2 = layers.core.Dropout(self.dropout)(y2)
y2 = self.conv_block(y2,
self.res_block_filters,
self.res_block_kernel_stride[2],
self.activation)
y2 = self.squeeze_excitation_layer(y2,
self.se_block_kernel_stride,
self.activation,
ratio = self.se_ratio)
y2 = layers.MaxPooling1D(pool_size = self.second_maxpooling_size[2],
strides = self.second_maxpooling_stride[2],
padding = 'same')(y2)
y2 = layers.core.Flatten()(y2)
output_conns.append(y2)
'''
EIN-d
'''
y3 = self.inception_block(input_tensor,
self.inception_filters,
self.inception_kernel_length[3],
self.inception_stride[3],
self.activation)
y3 = layers.MaxPooling1D(pool_size = self.first_maxpooling_size,
strides = self.first_maxpooling_stride,
padding = 'same')(y3)
y3 = BatchNormalization()(y3)
y3 = layers.core.Dropout(self.dropout)(y3)
y3 = self.conv_block(y3,
self.res_block_filters,
self.res_block_kernel_stride[3],
self.activation)
y3 = self.squeeze_excitation_layer(y3,
self.se_block_kernel_stride,
self.activation,
ratio = self.se_ratio)
y3 = layers.MaxPooling1D(pool_size = self.second_maxpooling_size[3],
strides = self.second_maxpooling_stride[3],
padding = 'same')(y3)
y3 = layers.core.Flatten()(y3)
output_conns.append(y3)
'''
EIN-e
'''
z = self.inception_block(input_tensor,
self.inception_filters,
self.inception_kernel_length[4],
self.inception_stride[4],
self.activation)
z = layers.MaxPooling1D(pool_size = self.first_maxpooling_size,
strides = self.first_maxpooling_stride,
padding = 'same')(z)
z = BatchNormalization()(z)
z = layers.core.Dropout(self.dropout)(z)
z = self.conv_block(z,
self.res_block_filters,
self.res_block_kernel_stride[4],
self.activation)
z = self.squeeze_excitation_layer(z,
self.se_block_kernel_stride,
self.activation,
ratio = self.se_ratio)
z = layers.MaxPooling1D(pool_size = self.second_maxpooling_size[4],
strides = self.second_maxpooling_stride[4],
padding = 'same')(z)
z = layers.core.Flatten()(z)
output_conns.append(z)
output_conns = layers.Concatenate(axis = -1)(output_conns)
output_conns = layers.core.Dropout(self.dropout)(output_conns)
output_tensor = layers.Dense(2,activation = 'sigmoid')(output_conns)
# output_tensor = layers.Dense(4,activation = 'softmax')(output_conns)
model = Model(input_tensor,output_tensor)
return model
'''
se_block
'''
def squeeze_excitation_layer(self,x,out_dim,activation,ratio=8):
squeeze = GlobalAveragePooling1D()(x)
excitation = Dense(units = out_dim//ratio)(squeeze)
excitation = Activation(activation)(excitation)
excitation = Dense(units = out_dim,activation='sigmoid')(excitation)
excitation = Reshape((1,out_dim))(excitation)
scale = multiply([x,excitation])
return scale
'''
res_block
'''
def conv_block(self,x,nb_filter,length,activation):
k1,k2,k3 = nb_filter
out = layers.Conv1D(k1,length,strides=1,padding='same',kernel_regularizer=regularizers.l2(0.002))(x)
out = BatchNormalization()(out)
out = Activation(activation)(out)
out = layers.Conv1D(k2,length,strides=1,padding='same',kernel_regularizer=regularizers.l2(0.002))(out)
out = BatchNormalization()(out)
out = Activation(activation)(out)
out = layers.Conv1D(k3,length,strides=1,padding='same',kernel_regularizer=regularizers.l2(0.002))(out)
out = BatchNormalization()(out)
x = layers.Conv1D(k3,1,strides = 1,padding = 'same')(x)
x = BatchNormalization()(x)
out = Add()([out,x])
out = Activation(activation)(out)
out = layers.core.Dropout(self.dropout)(out)
return out
'''
inception_block
'''
def inception_block(self,x,ince_filter,ince_length,stride,activation):
k1,k2,k3,k4 = ince_filter
l1,l2,l3,l4 = ince_length
inception = []
x1 = layers.Conv1D(k1,l1,strides = stride,padding = 'same',kernel_regularizer=regularizers.l2(0.01))(x)
x1 = BatchNormalization()(x1)
x1 = Activation(activation)(x1)
inception.append(x1)
x2 = layers.Conv1D(k2,l2,strides = stride,padding = 'same',kernel_regularizer=regularizers.l2(0.01))(x)
x2 = BatchNormalization()(x2)
x2 = Activation(activation)(x2)
inception.append(x2)
x3 = layers.Conv1D(k3,l3,strides = stride,padding = 'same',kernel_regularizer=regularizers.l2(0.01))(x)
x3 = BatchNormalization()(x3)
x3 = Activation(activation)(x3)
inception.append(x3)
x4 = layers.MaxPooling1D(pool_size = l4 ,strides = stride,padding = 'same')(x)
x4 = layers.Conv1D(k4,1,strides = 1,padding = 'same')(x4)
x4 = BatchNormalization()(x4)
x4 = Activation(activation)(x4)
inception.append(x4)
v1 = layers.Concatenate(axis = -1)(inception)
return v1