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Calculate similarity between different samples using VCF format varaint data for IBS/IBD analysis.

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zhuochenbioinfo/VcfWinSim

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VcfWinSim

Calculate similarity between different samples using VCF format varaint data for IBS/IBD analysis.

1. windowed_similarity.pl

Calculate similarity of target samples and query sample by window.

If the query and target samples are not in the same VCF file, please try windowed_similarity_sep.pl

2. dissect_similarity.pl

Infer the nearest target sample(s) to the query sample for each window.

For more details, please check the usage and the codes in the scripts.

Contact: chenomics@163.com or zhuochen@fafu.edu.cn

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Calculate similarity between different samples using VCF format varaint data for IBS/IBD analysis.

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