Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Amino Acid test with continuous outcome #4

Open
wusixer opened this issue Jun 16, 2018 · 2 comments
Open

Amino Acid test with continuous outcome #4

wusixer opened this issue Jun 16, 2018 · 2 comments
Assignees

Comments

@wusixer
Copy link

wusixer commented Jun 16, 2018

I'm trying to use HIBAG with continuous outcome to do allelic test and amino acid test, my allelic test ran really fast and has no issue. However, when running the amino acid test, it asked me to convert my outcome to factor, the association for amino acid test ran really slow and didn't output any result. I was wondering if it is capable for continuous phenotype.

In theory the "glm" model is supposed to handle this, but the documentation of HIBAG somehow makes me think it's not designed for AA test with continuous outcome.

Please let me know if I'm understanding it right.

@zhengxwen zhengxwen self-assigned this Jun 18, 2018
@zhengxwen
Copy link
Owner

I have not implemented such function (AA test with continuous outcomes) yet.
This feature requirement is added to my to-do list now.

@wusixer
Copy link
Author

wusixer commented Jun 21, 2018

Thank you! Do you have an idea when in the future it will be implemented?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants