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memory.py
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memory.py
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from __future__ import annotations
from typing import TYPE_CHECKING, Self
from zarr.abc.store import ByteRangeRequest, Store
from zarr.core.buffer import Buffer, gpu
from zarr.core.common import concurrent_map
from zarr.storage._utils import _normalize_interval_index
if TYPE_CHECKING:
from collections.abc import AsyncGenerator, Iterable, MutableMapping
from zarr.core.buffer import BufferPrototype
from zarr.core.common import AccessModeLiteral
class MemoryStore(Store):
"""
In-memory store for testing purposes.
Parameters
----------
store_dict : dict
Initial data
mode : str
Access mode
Attributes
----------
supports_writes
supports_deletes
supports_partial_writes
supports_listing
"""
supports_writes: bool = True
supports_deletes: bool = True
supports_partial_writes: bool = True
supports_listing: bool = True
_store_dict: MutableMapping[str, Buffer]
def __init__(
self,
store_dict: MutableMapping[str, Buffer] | None = None,
*,
mode: AccessModeLiteral = "r",
) -> None:
super().__init__(mode=mode)
if store_dict is None:
store_dict = {}
self._store_dict = store_dict
async def empty(self) -> bool:
# docstring inherited
return not self._store_dict
async def clear(self) -> None:
# docstring inherited
self._store_dict.clear()
def with_mode(self, mode: AccessModeLiteral) -> Self:
# docstring inherited
return type(self)(store_dict=self._store_dict, mode=mode)
def __str__(self) -> str:
return f"memory://{id(self._store_dict)}"
def __repr__(self) -> str:
return f"MemoryStore({str(self)!r})"
def __eq__(self, other: object) -> bool:
return (
isinstance(other, type(self))
and self._store_dict == other._store_dict
and self.mode == other.mode
)
async def get(
self,
key: str,
prototype: BufferPrototype,
byte_range: tuple[int | None, int | None] | None = None,
) -> Buffer | None:
# docstring inherited
if not self._is_open:
await self._open()
assert isinstance(key, str)
try:
value = self._store_dict[key]
start, length = _normalize_interval_index(value, byte_range)
return prototype.buffer.from_buffer(value[start : start + length])
except KeyError:
return None
async def get_partial_values(
self,
prototype: BufferPrototype,
key_ranges: Iterable[tuple[str, ByteRangeRequest]],
) -> list[Buffer | None]:
# docstring inherited
# All the key-ranges arguments goes with the same prototype
async def _get(key: str, byte_range: ByteRangeRequest) -> Buffer | None:
return await self.get(key, prototype=prototype, byte_range=byte_range)
return await concurrent_map(key_ranges, _get, limit=None)
async def exists(self, key: str) -> bool:
# docstring inherited
return key in self._store_dict
async def set(self, key: str, value: Buffer, byte_range: tuple[int, int] | None = None) -> None:
# docstring inherited
self._check_writable()
await self._ensure_open()
assert isinstance(key, str)
if not isinstance(value, Buffer):
raise TypeError(f"Expected Buffer. Got {type(value)}.")
if byte_range is not None:
buf = self._store_dict[key]
buf[byte_range[0] : byte_range[1]] = value
self._store_dict[key] = buf
else:
self._store_dict[key] = value
async def set_if_not_exists(self, key: str, value: Buffer) -> None:
# docstring inherited
self._check_writable()
await self._ensure_open()
self._store_dict.setdefault(key, value)
async def delete(self, key: str) -> None:
# docstring inherited
self._check_writable()
try:
del self._store_dict[key]
except KeyError:
pass
async def set_partial_values(self, key_start_values: Iterable[tuple[str, int, bytes]]) -> None:
# docstring inherited
raise NotImplementedError
async def list(self) -> AsyncGenerator[str, None]:
# docstring inherited
for key in self._store_dict:
yield key
async def list_prefix(self, prefix: str) -> AsyncGenerator[str, None]:
# docstring inherited
for key in self._store_dict:
if key.startswith(prefix):
yield key.removeprefix(prefix)
async def list_dir(self, prefix: str) -> AsyncGenerator[str, None]:
# docstring inherited
if prefix.endswith("/"):
prefix = prefix[:-1]
if prefix == "":
keys_unique = {k.split("/")[0] for k in self._store_dict}
else:
# Our dictionary doesn't contain directory markers, but we want to include
# a pseudo directory when there's a nested item and we're listing an
# intermediate level.
keys_unique = {
key.removeprefix(prefix + "/").split("/")[0]
for key in self._store_dict
if key.startswith(prefix + "/") and key != prefix
}
for key in keys_unique:
yield key
class GpuMemoryStore(MemoryStore):
"""A GPU only memory store that stores every chunk in GPU memory irrespective
of the original location.
The dictionary of buffers to initialize this memory store with *must* be
GPU Buffers.
Writing data to this store through ``.set`` will move the buffer to the GPU
if necessary.
Parameters
----------
store_dict: MutableMapping, optional
A mutable mapping with string keys and :class:`zarr.core.buffer.gpu.Buffer`
values.
"""
_store_dict: MutableMapping[str, gpu.Buffer] # type: ignore[assignment]
def __init__(
self,
store_dict: MutableMapping[str, gpu.Buffer] | None = None,
*,
mode: AccessModeLiteral = "r",
) -> None:
super().__init__(store_dict=store_dict, mode=mode) # type: ignore[arg-type]
def __str__(self) -> str:
return f"gpumemory://{id(self._store_dict)}"
def __repr__(self) -> str:
return f"GpuMemoryStore({str(self)!r})"
@classmethod
def from_dict(cls, store_dict: MutableMapping[str, Buffer]) -> Self:
"""
Create a GpuMemoryStore from a dictionary of buffers at any location.
The dictionary backing the newly created ``GpuMemoryStore`` will not be
the same as ``store_dict``.
Parameters
----------
store_dict: mapping
A mapping of strings keys to arbitrary Buffers. The buffer data
will be moved into a :class:`gpu.Buffer`.
Returns
-------
GpuMemoryStore
"""
gpu_store_dict = {k: gpu.Buffer.from_buffer(v) for k, v in store_dict.items()}
return cls(gpu_store_dict)
async def set(self, key: str, value: Buffer, byte_range: tuple[int, int] | None = None) -> None:
# docstring inherited
self._check_writable()
assert isinstance(key, str)
if not isinstance(value, Buffer):
raise TypeError(f"Expected Buffer. Got {type(value)}.")
# Convert to gpu.Buffer
gpu_value = value if isinstance(value, gpu.Buffer) else gpu.Buffer.from_buffer(value)
await super().set(key, gpu_value, byte_range=byte_range)