GitHub - yoavram/ipython-notebooks: My scattered Jupyter notebooks

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Name		Name	Last commit message	Last commit date
Latest commit History 230 Commits
js		js
notes		notes
reveal @ 784fa9d		reveal @ 784fa9d
.gitignore		.gitignore
.gitmodules		.gitmodules
1-prey-2-predators.ipynb		1-prey-2-predators.ipynb
Bull2005.ipynb		Bull2005.ipynb
CM and NM in constant environment.ipynb		CM and NM in constant environment.ipynb
Chevin2010.ipynb		Chevin2010.ipynb
Cooper - incomplete competitions.ipynb		Cooper - incomplete competitions.ipynb
Diffusion approximation to adaptation time.ipynb		Diffusion approximation to adaptation time.ipynb
Diffusion equation for Muller's ratchet.ipynb		Diffusion equation for Muller's ratchet.ipynb
Diffusion equation for simple WF model.ipynb		Diffusion equation for simple WF model.ipynb
FGM explained.ipynb		FGM explained.ipynb
Fixation of a beneficial allele.ipynb		Fixation of a beneficial allele.ipynb
Fixation time - Hartfield2011.ipynb		Fixation time - Hartfield2011.ipynb
GSSA.ipynb		GSSA.ipynb
IPython parallel map.ipynb		IPython parallel map.ipynb
Levin2014.ipynb		Levin2014.ipynb
Logistic Regression.ipynb		Logistic Regression.ipynb
MDS.ipynb		MDS.ipynb
MathModels Project.ipynb		MathModels Project.ipynb
MathModels project - s.ipynb		MathModels project - s.ipynb
Mendeley - Species name in italics.ipynb		Mendeley - Species name in italics.ipynb
Model-Selection-and-Validation.ipynb		Model-Selection-and-Validation.ipynb
Monte-Carlo method.ipynb		Monte-Carlo method.ipynb
NaomiZiv.ipynb		NaomiZiv.ipynb
Numerical integration.ipynb		Numerical integration.ipynb
ODENet.ipynb		ODENet.ipynb
ORCID API.ipynb		ORCID API.ipynb
PIL.ipynb		PIL.ipynb
PIT.ipynb		PIT.ipynb
Pearson's geometric.ipynb		Pearson's geometric.ipynb
Pfeiffer2001.ipynb		Pfeiffer2001.ipynb
README.md		README.md
RSVP.ipynb		RSVP.ipynb
Ramsay2007.ipynb		Ramsay2007.ipynb
Random function with wrapper to check for trivial cases.ipynb		Random function with wrapper to check for trivial cases.ipynb
SIDEER2013.ipynb		SIDEER2013.ipynb
Simple logistic regression.ipynb		Simple logistic regression.ipynb
Spatial Moran process.ipynb		Spatial Moran process.ipynb
Stochastic logistic model.ipynb		Stochastic logistic model.ipynb
Tanaka2003.ipynb		Tanaka2003.ipynb
The Zen of Python.ipynb		The Zen of Python.ipynb
Two continuous traits WF model.ipynb		Two continuous traits WF model.ipynb
WF-inference.ipynb		WF-inference.ipynb
WF-numpy-dask.ipynb		WF-numpy-dask.ipynb
Wright-Fisher simulation.ipynb		Wright-Fisher simulation.ipynb
Yeast.MA.ColonyGrowth.YPD.ipynb		Yeast.MA.ColonyGrowth.YPD.ipynb
async.ipynb		async.ipynb
beta-test.ipynb		beta-test.ipynb
betareg.py		betareg.py
bin2hex.ipynb		bin2hex.ipynb
binomial test.ipynb		binomial test.ipynb
binomial_inference.ipynb		binomial_inference.ipynb
catastrophic_cancellation.ipynb		catastrophic_cancellation.ipynb
choose k from n benchmark.ipynb		choose k from n benchmark.ipynb
cross-feeding.ipynb		cross-feeding.ipynb
csv cache.ipynb		csv cache.ipynb
cv with scholar.py.ipynb		cv with scholar.py.ipynb
cython_test.ipynb		cython_test.ipynb
dask-multinomial.ipynb		dask-multinomial.ipynb
debug_sitebuilder.ipynb		debug_sitebuilder.ipynb
debugging fixation time.ipynb		debugging fixation time.ipynb
delfi_quickstart.ipynb		delfi_quickstart.ipynb
do comparison operators complete each other.ipynb		do comparison operators complete each other.ipynb
download.ipynb		download.ipynb
dropbox test.ipynb		dropbox test.ipynb
earth and moon.ipynb		earth and moon.ipynb
effective recombination rate SIMARBA.ipynb		effective recombination rate SIMARBA.ipynb
exponential regression of adaptation time.ipynb		exponential regression of adaptation time.ipynb
ffn.ipynb		ffn.ipynb
find s from fixaiton prob.ipynb		find s from fixaiton prob.ipynb
genome lookup.ipynb		genome lookup.ipynb
ggplot test run.ipynb		ggplot test run.ipynb
graph_tool.ipynb		graph_tool.ipynb
h-index.ipynb		h-index.ipynb
heatmap.ipynb		heatmap.ipynb
hire_clus.ipynb		hire_clus.ipynb
infer logistic model.ipynb		infer logistic model.ipynb
jax-ode-fit.ipynb		jax-ode-fit.ipynb
likelihood ratio test.ipynb		likelihood ratio test.ipynb
lmfit LOOCV.ipynb		lmfit LOOCV.ipynb
ma_analysis.ipynb		ma_analysis.ipynb
mamba debug 27-11.ipynb		mamba debug 27-11.ipynb
mamba debug.ipynb		mamba debug.ipynb
mamba mutation cython.ipynb		mamba mutation cython.ipynb
mamba notebook.ipynb		mamba notebook.ipynb
mamba on ubuntu.ipynb		mamba on ubuntu.ipynb
markov.ipynb		markov.ipynb
markx.ipynb		markx.ipynb
monod.ipynb		monod.ipynb
multiprocessing.ipynb		multiprocessing.ipynb
nicholson-bailey.ipynb		nicholson-bailey.ipynb
numba test.ipynb		numba test.ipynb
numexpr in mamba.ipynb		numexpr in mamba.ipynb
numpy-benchmark.ipynb		numpy-benchmark.ipynb
numpy_or_python.ipynb		numpy_or_python.ipynb
odespy.ipynb		odespy.ipynb
pandas duplicate column bug.ipynb		pandas duplicate column bug.ipynb

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These are my IPython notebooks.

You can browse them with nbviewer.

You can fork or clone them (git clone https://github.com/yoavram/ipython-notebooks.git).

Unless specified otherwise in the notebook body, all notebooks are licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. If the NC clause is a problem please contact me.

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