YangLab@Northwestern

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1. OctopuSV OctopuSV Public

   Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.

   Python 51 3

2. ScanNeo ScanNeo Public

   A pipeline for identifying indel derived neoantigens using RNA-Seq data

   Python 30 7

3. EasyEvo2 EasyEvo2 Public

   To use Evo2 easily

   Python 24 1

4. ScanNeo2 ScanNeo2 Public

   Snakemake-based computational workflow for neoantigen prediction from diverse sources

   Python 21 1

5. pxblat pxblat Public

   PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

   C 18 1

6. ScanExitron ScanExitron Public

   A computational workflow for exitron splicing identification

   Shell 16 6