NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(get_sample_ids,Metadata)
S3method(get_subset,Metadata)
S3method(make_groups,Metadata)
S3method(select_samples,Metadata)
export(DEGanalysis)
export(Metadata)
export(adjust_p)
export(analyze_degs)
export(anno_genes)
export(annot)
export(annot_align)
export(counts2fpkm)
export(custom_theme)
export(deg_stat)
export(draw_barplot)
export(draw_heatmap)
export(draw_pca)
export(draw_volcano)
export(draw_volcano_ggplot)
export(enricher)
export(fpkm2tpm)
export(logFC)
export(make.pathwaytable)
export(match.genelists)
export(read.pathways)
export(remove_genes)
export(remove_zero)
export(save2pdf)
export(ttest)
export(which_database)
export(wilcox_test)
import(AnnotationDbi)
import(DOSE)
import(Homo.sapiens)
import(Mus.musculus)
import(clusterProfiler)
import(ggplot2)
import(pathview)
import(topGO)
importFrom(AnnotationDbi,mapIds)
importFrom(EnhancedVolcano,EnhancedVolcano)
importFrom(data.table,as.data.table)
importFrom(dplyr,"%>%")
importFrom(dplyr,bind_rows)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,filterByExpr)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(limma,eBayes)
importFrom(limma,getGeneKEGGLinks)
importFrom(limma,getKEGGPathwayNames)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(org.Hs.eg.db,org.Hs.eg.db)
importFrom(org.Mm.eg.db,org.Mm.eg.db)
importFrom(pheatmap,pheatmap)
importFrom(purrr,map)
importFrom(purrr,map_df)
importFrom(purrr,partial)
importFrom(sqldf,sqldf)
importFrom(stringr,str_starts)