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<html>
<head>
<title>
TET_MESH_RCM - Reverse Cuthill-McKee Node Reordering
</title>
</head>
<body bgcolor="#EEEEEE" link="#CC0000" alink="#FF3300" vlink="#000055">
<h1 align = "center">
TET_MESH_RCM <br> Reverse Cuthill-McKee Node Reordering
</h1>
<hr>
<p>
<b>TET_MESH_RCM</b>
is a FORTRAN90 program which
computes the reverse
Cuthill-McKee reordering for nodes in a tetrahedral mesh ("tet mesh").
</p>
<p>
The user supplies a node file and a tetrahedron file, containing
the coordinates of the nodes, and the indices of the nodes that
make up each tetrahedron. Either 4-node or 10-node tetrahedrons may
be used.
</p>
<p>
The program reads the data, computes the adjacency information,
carries out the RCM algorithm to get the permutation, applies
the permutation to the nodes and tetrahedrons, and writes out
new node and tetrahedron files that correspond to the RCM permutation.
</p>
<p>
Note that the node file would normally contain exactly 3 values
on each line, namely the X, Y and Z coordinates of the nodes.
However, this is not necessary. Extra information can be
included on each line, for instance, a "W" coordinate. Each
line should include the same number of items, but all will be
permuted correctly together. The program does not actually
need to know the coordinates of the nodes, so in fact, ANY data
(as long as it is real numeric data) associated with the nodes
can be listed in the node file, and will be correctly permuted.
</p>
<h3 align = "center">
Usage:
</h3>
<p>
<blockquote>
<b>tet_mesh_rcm</b> <i>prefix</i>
</blockquote>
where <i>prefix</i> is the common file prefix:
<ul>
<li>
<i>prefix</i><b>_nodes.txt</b>, the node coordinates;
</li>
<li>
<i>prefix</i><b>_elements.txt</b>, the element definitions.
</li>
<li>
<i>prefix</i><b>_rcm_nodes.txt</b>, the reordered node coordinates;
</li>
<li>
<i>prefix</i><b>_rcm_elements.txt</b>, the reordered element definitions.
</li>
</ul>
</p>
<h3 align = "center">
Licensing:
</h3>
<p>
The computer code and data files described and made available on this web page
are distributed under
<a href = "../../txt/gnu_lgpl.txt">the GNU LGPL license.</a>
</p>
<h3 align = "center">
Languages:
</h3>
<p>
<b>TET_MESH_RCM</b> is available in
<a href = "../../cpp_src/tet_mesh_rcm/tet_mesh_rcm.html">a C++ version</a> and
<a href = "../../f_src/tet_mesh_rcm/tet_mesh_rcm.html">a FORTRAN90 version</a> and
<a href = "../../m_src/tet_mesh_rcm/tet_mesh_rcm.html">a MATLAB version</a>.
</p>
<h3 align = "center">
Related Data and Programs:
</h3>
<p>
<a href = "../../f_src/cvt_tet_mesh/cvt_tet_mesh.html">
CVT_TET_MESH</a>,
is a FORTRAN90 program which
uses CVT techniques to compute a tet mesh in a region.
</p>
<p>
<a href = "../../f_src/mesh_bandwidth/mesh_bandwidth.html">
MESH_BANDWIDTH</a>,
is a FORTRAN90 program which
returns the geometric bandwidth associated with a mesh of
elements of any order and in a space of arbitrary dimension.
</p>
<p>
<a href = "../../f_src/quad_mesh_rcm/quad_mesh_rcm.html">
QUAD_MESH_RCM</a>,
a FORTRAN90 program which
computes the reverse Cuthill-McKee (RCM) reordering for nodes in a mesh of 4-node
quadrilaterals.
</p>
<p>
<a href = "../../f_src/rcm/rcm.html">
RCM</a>,
a FORTRAN90 library which
carries out reverse Cuthill-McKee computations.
</p>
<p>
<a href = "../../f_src/table_tet_mesh/table_tet_mesh.html">
TABLE_TET_MESH</a>,
a FORTRAN90 program which
computes the tet mesh
for a given set of points.
</p>
<p>
<a href = "../../f_src/test_tet_mesh/test_tet_mesh.html">
TEST_TET_MESH</a>,
a FORTRAN90 library which
defines regions for which
a tet mesh is desired.
</p>
<p>
<a href = "../../f_src/tet_mesh/tet_mesh.html">
TET_MESH</a>,
a FORTRAN90 library which
works with tet meshes.
</p>
<p>
<a href = "../../m_src/tet_mesh_display/tet_mesh_display.html">
TET_MESH_DISPLAY</a>,
a MATLAB program which
reads in the node and tetra files defining a tet mesh and displays a wireframe
image.
</p>
<p>
<a href = "../../cpp_src/tet_mesh_display_opengl/tet_mesh_display_opengl.html">
TET_MESH_DISPLAY_OPENGL</a>,
a C++ program which
reads a tet mesh and displays the
nodes and edges using OpenGL.
</p>
<p>
<a href = "../../f_src/tet_mesh_l2q/tet_mesh_l2q.html">
TET_MESH_L2Q</a>,
a FORTRAN90 program which
converts a linear (4-node) to quadratic (10-node) tetrahedral mesh.
</p>
<p>
<a href = "../../data/tet_mesh_order4/tet_mesh_order4.html">
TET_MESH_ORDER4</a>,
a directory which
contains a description and
examples of a tet mesh using order 4 elements.
</p>
<p>
<a href = "../../data/tet_mesh_order10/tet_mesh_order10.html">
TET_MESH_ORDER10</a>,
a directory which
contains a description and
examples of a tet mesh using order 10 elements.
</p>
<p>
<a href = "../../f_src/tet_mesh_q2l/tet_mesh_q2l.html">
TET_MESH_Q2L</a>,
a FORTRAN90 program which
converts a
quadratic (10-node) to linear (4-node) tetrahedral mesh.
</p>
<p>
<a href = "../../f_src/tet_mesh_quality/tet_mesh_quality.html">
TET_MESH_QUALITY</a>,
a FORTRAN90 program which
computes the quality of a tetrahedral mesh.
</p>
<p>
<a href = "../../f_src/tet_mesh_refine/tet_mesh_refine.html">
TET_MESH_REFINE</a>,
a FORTRAN90 program which
can refine a tet mesh.
</p>
<p>
<a href = "../../f_src/tet_mesh_tet_neighbors/tet_mesh_tet_neighbors.html">
TET_MESH_TET_NEIGHBORS</a>,
a FORTRAN90 program which
computes the tetrahedral adjacency information.
</p>
<p>
<a href = "../../f_src/tet_mesh_volumes/tet_mesh_volumes.html">
TET_MESH_VOLUMES</a>,
a FORTRAN90 program which
computes the volume of each tetrahedron in a tet mesh;
</p>
<p>
<a href = "../../f_src/triangulation_rcm/triangulation_rcm.html">
TRIANGULATION_RCM</a>,
a FORTRAN90 program which
applies the reverse Cuthill-McKee reordering to a triangulation of 2D data.
</p>
<h3 align = "center">
Reference:
</h3>
<p>
<ol>
<li>
HL Crane, Norman Gibbs, William Poole, Paul Stockmeyer,<br>
Algorithm 508:
Matrix Bandwidth and Profile Reduction,<br>
ACM Transactions on Mathematical Software,<br>
Volume 2, Number 4, December 1976, pages 375-377.
</li>
<li>
Herbert Edelsbrunner,<br>
Geometry and Topology for Mesh Generation,<br>
Cambridge, 2001,<br>
ISBN: 0-521-79309-2,<br>
LC: QA377.E36.
</li>
<li>
Alan George, Joseph Liu,<br>
Computer Solution of Large Sparse Positive Definite Matrices,<br>
Prentice Hall, 1981,<br>
ISBN: 0131652745,<br>
LC: QA188.G46
</li>
<li>
Norman Gibbs,<br>
Algorithm 509:
A Hybrid Profile Reduction Algorithm,<br>
ACM Transactions on Mathematical Software,<br>
Volume 2, Number 4, December 1976, pages 378-387.
</li>
<li>
Norman Gibbs, William Poole, Paul Stockmeyer,<br>
An Algorithm for Reducing the Bandwidth
and Profile of a Sparse Matrix,<br>
SIAM Journal on Numerical Analysis,<br>
Volume 13, Number 2, April 1976, pages 236-250.
</li>
<li>
Barry Joe,<br>
GEOMPACK - a software package for the generation of meshes
using geometric algorithms,<br>
Advances in Engineering Software,<br>
Volume 13, 1991, pages 325-331.
</li>
<li>
Per-Olof Persson, Gilbert Strang,<br>
A Simple Mesh Generator in MATLAB,<br>
SIAM Review,<br>
Volume 46, Number 2, June 2004, pages 329-345.
</li>
</ol>
</p>
<h3 align = "center">
Source Code:
</h3>
<p>
<ul>
<li>
<a href = "tet_mesh_rcm.f90">tet_mesh_rcm.f90</a>, the source code.
</li>
<li>
<a href = "tet_mesh_rcm.sh">tet_mesh_rcm.sh</a>,
commands to compile the source code.
</li>
</ul>
</p>
<h3 align = "center">
Examples and Tests:
</h3>
<p>
<b>CUBE4</b> is an order 4 tet mesh of a cube:
<ul>
<li>
<a href = "cube4_output.txt">cube4_output.txt</a>,
the printed output from the command <br>
"tet_mesh_rcm cube4_nodes.txt cube4_tetras.txt"
</li>
<li>
<a href = "cube4_nodes.txt">cube4_nodes.txt</a>,
the node file.
</li>
<li>
<a href = "cube4_elements.txt">cube4_elements.txt</a>,
the element file.
</li>
<li>
<a href = "cube4_rcm_nodes.txt">cube4_rcm_nodes.txt</a>,
the RCM reordered node file.
</li>
<li>
<a href = "cube4_rcm_elements.txt">cube4_rcm_elements.txt</a>,
the RCM reordered element file.
</li>
</ul>
</p>
<p>
<b>P03_00224</b>.
<ul>
<li>
<a href = "p03_00224_output.txt">p03_00224_output.txt</a>,
the printed output from the command <br>
"tet_mesh_rcm p03_00224_nodes.txt p03_00224_tetras.txt"
</li>
<li>
<a href = "p03_00224_nodes.txt">p03_00224_nodes.txt</a>,
the node file.
</li>
<li>
<a href = "p03_00224_elements.txt">p03_00224_elements.txt</a>,
the element file.
</li>
<li>
<a href = "p03_00224_rcm_nodes.txt">p03_00224_rcm_nodes.txt</a>,
the RCM reordered node file.
</li>
<li>
<a href = "p03_00224_rcm_elements.txt">p03_00224_rcm_elements.txt</a>,
the RCM reordered element file.
</li>
</ul>
</p>
<h3 align = "center">
List of Routines:
</h3>
<p>
<ul>
<li>
<b>MAIN</b> is the main program for TET_MESH_RCM.
</li>
<li>
<b>ADJ_BANDWIDTH</b> computes the bandwidth of an adjacency matrix.
</li>
<li>
<b>ADJ_PERM_BANDWIDTH</b> computes the bandwidth of a permuted adjacency matrix.
</li>
<li>
<b>ADJ_PRINT</b> prints adjacency information.
</li>
<li>
<b>ADJ_PRINT_SOME</b> prints some adjacency information.
</li>
<li>
<b>CH_CAP</b> capitalizes a single character.
</li>
<li>
<b>CH_EQI</b> is a case insensitive comparison of two characters for equality.
</li>
<li>
<b>CH_TO_DIGIT</b> returns the integer value of a base 10 digit.
</li>
<li>
<b>DEGREE</b> computes the degrees of the nodes in the connected component.
</li>
<li>
<b>FILE_COLUMN_COUNT</b> counts the number of columns in the first line of a file.
</li>
<li>
<b>FILE_ROW_COUNT</b> counts the number of row records in a file.
</li>
<li>
<b>GENRCM</b> finds the reverse Cuthill-Mckee ordering for a general graph.
</li>
<li>
<b>GET_UNIT</b> returns a free FORTRAN unit number.
</li>
<li>
<b>I4_SWAP</b> swaps two integer values.
</li>
<li>
<b>I4COL_COMPARE</b> compares columns I and J of an I4COL.
</li>
<li>
<b>I4COL_SORT_A</b> ascending sorts an I4COL.
</li>
<li>
<b>I4COL_SORT2_A</b> ascending sorts the elements of each column of an I4COL.
</li>
<li>
<b>I4COL_SORTED_UNIQUE_COUNT</b> counts unique elements in an I4COL.
</li>
<li>
<b>I4COL_SWAP</b> swaps columns J1 and J2 of an I4COL.
</li>
<li>
<b>I4MAT_DATA_READ</b> reads data from an I4MAT file.
</li>
<li>
<b>I4MAT_HEADER_READ</b> reads the header from an I4MAT.
</li>
<li>
<b>I4MAT_TRANSPOSE_PRINT_SOME</b> prints some of the transpose of an I4MAT.
</li>
<li>
<b>I4MAT_WRITE</b> writes an I4MAT file.
</li>
<li>
<b>I4ROW_COMPARE</b> compares two rows of an I4ROW.
</li>
<li>
<b>I4ROW_SORT_A</b> ascending sorts the rows of an I4ROW.
</li>
<li>
<b>I4ROW_SWAP</b> swaps two rows of an I4ROW.
</li>
<li>
<b>I4VEC_PRINT</b> prints an I4VEC.
</li>
<li>
<b>I4VEC_REVERSE</b> reverses the elements of an I4VEC.
</li>
<li>
<b>LEVEL_SET</b> generates the connected level structure rooted at a given node.
</li>
<li>
<b>MESH_BASE_ONE</b> ensures that the element definition is one-based.
</li>
<li>
<b>PERM_CHECK</b> checks that a vector represents a permutation.
</li>
<li>
<b>PERM_INVERSE3</b> produces the inverse of a given permutation.
</li>
<li>
<b>R8COL_PERMUTE</b> permutes an R8COL in place.
</li>
<li>
<b>R8MAT_DATA_READ</b> reads data from an R8MAT file.
</li>
<li>
<b>R8MAT_HEADER_READ</b> reads the header from an R8MAT file.
</li>
<li>
<b>R8MAT_TRANSPOSE_PRINT_SOME</b> prints some of an R8MAT, transposed.
</li>
<li>
<b>R8MAT_WRITE</b> writes an R8MAT file.
</li>
<li>
<b>RCM</b> renumbers a connected component by the reverse Cuthill McKee algorithm.
</li>
<li>
<b>ROOT_FIND</b> finds a pseudo-peripheral node.
</li>
<li>
<b>S_TO_I4</b> reads an I4 from a string.
</li>
<li>
<b>S_TO_I4VEC</b> reads an I4VEC from a string.
</li>
<li>
<b>S_TO_R8</b> reads an R8 from a string.
</li>
<li>
<b>S_TO_R8VEC</b> reads an R8VEC from a string.
</li>
<li>
<b>S_WORD_COUNT</b> counts the number of "words" in a string.
</li>
<li>
<b>SORT_HEAP_EXTERNAL</b> externally sorts a list of items into ascending order.
</li>
<li>
<b>TET_MESH_ORDER4_ADJ_COUNT</b> counts the number of nodal adjacencies.
</li>
<li>
<b>TET_MESH_ORDER4_ADJ_SET</b> sets the nodal adjacency matrix.
</li>
<li>
<b>TIMESTAMP</b> prints the current YMDHMS date as a time stamp.
</li>
</ul>
</p>
<p>
You can go up one level to <a href = "../f_src.html">
the FORTRAN90 source codes</a>.
</p>
<hr>
<i>
Last revised on 30 September 2009.
</i>
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