update documents

Author: Zhong Wang

Funmap-vignette-v2.4.pdf

@@ -0,0 +1,97 @@
+id,Marker,Dist,grp_idx,Group
+1,D1Mit3,0,1,G1
+2,D1Mit20,9.4,1,G1
+3,D1Mit74,29.5,1,G1
+4,D1Mit7,41.4,1,G1
+5,D1Mit11,52.1,1,G1
+6,D1Mit14,73.3,1,G1
+7,D1Mit17,115.2,1,G1
+8,D1Mit155,131.7,1,G1
+9,D2Mit1,0,2,G2
+10,D2Mit370,41.2,2,G2
+11,D2Mit380,61.8,2,G2
+12,D2Mit17,84.5,2,G2
+13,D2Mit22,110.7,2,G2
+14,D2Mit265,139.7,2,G2
+15,D3Mit54,0,3,G3
+16,D3Mit22,50,3,G3
+17,D3Mit12,64.8,3,G3
+18,D3Mit49,70.3,3,G3
+19,D3Mit194,108.4,3,G3
+20,D3Mit32,122.5,3,G3
+21,D4Mit2,0,4,G4
+22,D4Mit163,15.8,4,G4
+23,D4Mit17,30.1,4,G4
+24,D4Mit45,45.7,4,G4
+25,D4Mit16,67.4,4,G4
+26,D4Mit13,91,4,G4
+27,D5MIT47,0,5,G5
+28,D5MIT61,19.2,5,G5
+29,D5MIT6,71.2,5,G5
+30,D5MIT26,81.4,5,G5
+31,D5MIT165,112.2,5,G5
+32,D5MIT43,125.9,5,G5
+33,D6Mit1,0,6,G6
+34,D6Mit9,45.2,6,G6
+35,D6Nds5,62,6,G6
+36,D6Mit58,86.1,6,G6
+37,D6Mit15,94.1,6,G6
+38,D7MIT21,0,7,G7
+39,D7MIT26,26.1,7,G7
+40,D7Nds1,36.5,7,G7
+41,D7MIT148,46,7,G7
+42,D7MIT17,48.7,7,G7
+43,D7MIT9,60.3,7,G7
+44,D7MIT71,68,7,G7
+45,D7MIT46,82,7,G7
+46,D7Nds4,90,7,G7
+47,D8Mit293,0,8,G8
+48,D8Mit25,21.9,8,G8
+49,D8MIT89,65.5,8,G8
+50,D8MIT56,78,8,G8
+51,D9MIT2,0,9,G9
+52,D9MIT4,14.7,9,G9
+53,D9MIT8,32,9,G9
+54,D9MIT19,74.4,9,G9
+55,D10Mit2,0,10,G10
+56,D10Mit15,34,10,G10
+57,D10Mit65,48.9,10,G10
+58,D10Mit10,62.2,10,G10
+59,D10Mit133,69.3,10,G10
+60,D10Mit14,81.1,10,G10
+61,D11Mit62,0,11,G11
+62,D11Mit64,44.7,11,G11
+63,D11Mit15,57.4,11,G11
+64,D11Mit14,81,11,G11
+65,D11Mit333,96.9,11,G11
+66,D11Mit48,113,11,G11
+67,D12MIT37,0,12,G12
+68,D12MIT2,18.4,12,G12
+69,D12MIT5,39,12,G12
+70,D12MIT6,49.4,12,G12
+71,D12NDS2,68.3,12,G12
+72,D13Mit1,0,13,G13
+73,D13Mit115,8.5,13,G13
+74,D13Mit9,62.7,13,G13
+75,D13Mit35,101.7,13,G13
+76,D14Nds1,0,14,G14
+77,D14Mit5,45.5,14,G14
+78,D14MIT7,66.1,14,G14
+79,D14Mit266,91.9,14,G14
+80,D15Mit13,0,15,G15
+81,D15Mit5,21.8,15,G15
+82,D15Mit2,43.8,15,G15
+83,D15Mit42,71.1,15,G15
+84,D16Mit2,0,16,G16
+85,D16Mit5,30.6,16,G16
+86,D17Mit46,0,17,G17
+87,D17Mit16,7.5,17,G17
+88,D17Mit39,43.4,17,G17
+89,D18Mit12,0,18,G18
+90,D18Mit17,4.4,18,G18
+91,D18Mit51,24.2,18,G18
+92,D18Mit79,44,18,G18
+93,D19Mit16,0,19,G19
+94,D19Mit2,49.8,19,G19
+95,D19Mit35,56.7,19,G19
+96,D19Mit137,61.1,19,G19

Funmap2/inst/extdata/mice.F2.geno.csv

@@ -0,0 +1,276 @@
+id,Marker,Dist,grp_idx,Group
+1,TC/CAA-250R ,0,1,D1
+2,TC/CGT-120  ,25.1,1,D1
+3,CG/CTT-430  ,37,1,D1
+4,CG/CTT-435  ,38.2,1,D1
+5,CG/CTT-440R ,39.3,1,D1
+6,TC/CCG-500  ,62.3,1,D1
+7,GT/CTC-765R ,73.8,1,D1
+8,TC/CCG-495R ,85.6,1,D1
+9,W19-500R    ,116.2,1,D1
+10,AY20-610R   ,141.3,1,D1
+11,F19-410R    ,159.8,1,D1
+12,B11-970R    ,166.5,1,D1
+13,AG/CCG-480  ,178.2,1,D1
+14,AG/CCG-550  ,179.4,1,D1
+15,V17-1100    ,192.5,1,D1
+16,B11-1600    ,0,2,D2
+17,D5-2500     ,23.9,2,D2
+18,D15-2500    ,41.2,2,D2
+19,T17-2600    ,59.8,2,D2
+20,AY20-2000   ,82.3,2,D2
+21,Q7-2400     ,94.9,2,D2
+22,AP5-2500D   ,109.9,2,D2
+23,AI17-2000   ,130,2,D2
+24,AI17-580R   ,157,2,D2
+25,L13-800     ,174.5,2,D2
+26,Q7-500      ,203.2,2,D2
+27,C9-1100     ,232.4,2,D2
+28,AT/CGC-465  ,0,3,D3_1
+29,O13-950     ,24.2,3,D3_1
+30,TC/CCT-580  ,29.8,3,D3_1
+31,CA/CCA-580  ,51.7,3,D3_1
+32,GT/CAT-795  ,59.2,3,D3_1
+33,CG/CAA-245  ,61.9,3,D3_1
+34,TC/CAC-490  ,64.6,3,D3_1
+35,CG/CAA-235  ,65.7,3,D3_1
+36,CG/CTT-560R ,65.7,3,D3_1
+37,CG/CTT-570R ,67.9,3,D3_1
+38,CT/CAG-350R ,76.2,3,D3_1
+39,CT/CAG-505  ,92.2,3,D3_1
+40,CA/CTG-830D ,120.6,3,D3_1
+41,G17-910     ,0,4,D3_2
+42,CT/CAG-325  ,20.3,4,D3_2
+43,GC/CGC-830R ,27.4,4,D3_2
+44,CT/CAG-340  ,30.8,4,D3_2
+45,T6-880R     ,39,4,D3_2
+46,CG/CCT-180  ,63.2,4,D3_2
+47,CG/CCT-185  ,77.4,4,D3_2
+48,ECAMCAG-320R,0,5,D4-1
+49,ECTMCAG-775R,8.6,5,D4-1
+50,EGCMCGT-520 ,20.6,5,D4-1
+51,ECAMCGA-745 ,31.3,5,D4-1
+52,EAGMCGA-395D,59.6,5,D4-1
+53,CA/CCG-680D ,0,6,D4_2
+54,AG/CGA-605R ,28.4,6,D4_2
+55,GT/CAT-915  ,53.9,6,D4_2
+56,TC/CAC-415R ,70.3,6,D4_2
+57,TC/CAG-460D ,77.1,6,D4_2
+58,CA/CAC-530  ,87.7,6,D4_2
+59,GT/CTT-650  ,107,6,D4_2
+60,AQ2-1220    ,0,7,D4_3
+61,TT/CGA-395  ,17.9,7,D4_3
+62,AG/CGA-405  ,26.8,7,D4_3
+63,AG/CCG-470RD,37.7,7,D4_3
+64,CA/CCA-905  ,0,8,D5
+65,AA11-1000RD ,10.1,8,D5
+66,CA/CAG-180  ,18.5,8,D5
+67,CT/CAG-920  ,26.4,8,D5
+68,GT/CAG-725  ,48.1,8,D5
+69,GT/CAG-750R ,53.8,8,D5
+70,TA/CGA-925R ,73.5,8,D5
+71,GC/CCG-575R ,113.7,8,D5
+72,CA/CGC-780R ,137.6,8,D5
+73,TA/CGA-450  ,152,8,D5
+74,TA/CGA-430  ,156.6,8,D5
+75,TC/CAG-410  ,183.1,8,D5
+76,TT/CCT-320R ,213,8,D5
+77,CA/CCT-350D ,228,8,D5
+78,CA/CCA-740D ,0,9,D6
+79,CG/CCT-270  ,27.5,9,D6
+80,CA/CCA-900R ,35.8,9,D6
+81,K10-910     ,52,9,D6
+82,CT/CAG-755R ,79.8,9,D6
+83,CT/CAG-780R ,91.7,9,D6
+84,GT/CTC-660  ,112.7,9,D6
+85,GT/CTC-330  ,117.3,9,D6
+86,GC/CTT-330  ,123,9,D6
+87,CA/CGT-485  ,124.1,9,D6
+88,AG/CCG-905R ,150.5,9,D6
+89,CA/CCC-400  ,180.6,9,D6
+90,R19-1750R   ,0,10,D7
+91,CG/CAA-585R ,30.9,10,D7
+92,TC/CCC-530R ,43,10,D7
+93,AA/CGT-440  ,52.2,10,D7
+94,AA/CGT-450  ,52.2,10,D7
+95,AQ3-700D    ,65.1,10,D7
+96,AZ13-500R   ,90.5,10,D7
+97,TT/CGA-640R ,111.1,10,D7
+98,TC/CAG-100R ,129.7,10,D7
+99,AU3-850R    ,160.4,10,D7
+100,CG/CGA-855R ,0,11,D8
+101,P4-500R     ,22.2,11,D8
+102,TA/CGG-630  ,33.4,11,D8
+103,GT/CAG-540R ,52.9,11,D8
+104,TT/CTT-820  ,66.6,11,D8
+105,CC/CTC-590  ,70.1,11,D8
+106,T8-700R     ,78.3,11,D8
+107,CG/CGA-405R ,87.1,11,D8
+108,H14-980     ,111.8,11,D8
+109,TC/CCC-580  ,0,12,D9
+110,CT/CAG-830R ,4.8,12,D9
+111,TT/CTG-480RD,36.7,12,D9
+112,AV14-900R   ,54,12,D9
+113,E5-600      ,67.7,12,D9
+114,T17-1700R   ,82.6,12,D9
+115,Q9-1700R    ,85.9,12,D9
+116,CG/CCT-655  ,93.6,12,D9
+117,CG/CCT-620  ,95.1,12,D9
+118,CA/CAG-660  ,117.7,12,D9
+119,CA/CCC-640R ,0,13,D10
+120,CG/CCC-825  ,33.1,13,D10
+121,TT/CTT-475R ,46.7,13,D10
+122,TC/CAA-540  ,59.9,13,D10
+123,TC/CTG-750  ,66.7,13,D10
+124,CG/CTC-530  ,81.6,13,D10
+125,GC/CCG-175  ,101.2,13,D10
+126,AM20-850R   ,112.1,13,D10
+127,AQ2-590     ,0,14,D11
+128,AG20-400    ,17.3,14,D11
+129,CA/CCT-185R ,27.2,14,D11
+130,GC/CCG-370  ,34.6,14,D11
+131,GC/CCG-480  ,39.2,14,D11
+132,AA/CGT-980  ,68.2,14,D11
+133,TC/CGC-250R ,84.9,14,D11
+134,CG/CTC-500D ,107,14,D11
+135,AQ4-1600    ,123.2,14,D11
+136,B5-600      ,124.3,14,D11
+137,T3-1210R    ,130,14,D11
+138,B6-900      ,130,14,D11
+139,TC/CGA-400  ,135.8,14,D11
+140,TA/CGA-760R ,138.4,14,D11
+141,TA/CGA-755  ,138.4,14,D11
+142,GC/CTC-720R ,144,14,D11
+143,CG/CTT-360  ,158.6,14,D11
+144,CG/CTT-350  ,158.6,14,D11
+145,CC/CTA-580  ,163.1,14,D11
+146,AA/CGT-720R ,169.8,14,D11
+147,GC/CGT-455  ,181.2,14,D11
+148,IS12-850R   ,200.3,14,D11
+149,ECAMCGT-640R,0,15,D12
+150,AA10-390R   ,11.3,15,D12
+151,ETAMCGG-650R,19,15,D12
+152,AP7-750     ,36.1,15,D12
+153,ETCMCAC-440R,64.5,15,D12
+154,ETCMCAG-415 ,73.5,15,D12
+155,A12-950     ,111.1,15,D12
+156,W4-750R     ,123.6,15,D12
+157,AJ8-630     ,134.9,15,D12
+158,AG19-690    ,145,15,D12
+159,ETTMCTT-435R,166,15,D12
+160,ETAMCGA-245R,181.3,15,D12
+161,ECGMCAA-825R,192.3,15,D12
+162,EAGMCCG-415 ,200.6,15,D12
+163,EAGMCGA-175 ,202.2,15,D12
+164,ECAMCCA-700 ,208.7,15,D12
+165,ECAMCCA-680 ,209.9,15,D12
+166,AP4-900     ,225.5,15,D12
+167,ETTMCTG-445 ,233.4,15,D12
+168,AG19-1100R  ,0,16,D13
+169,CA/CCG-370  ,10.7,16,D13
+170,CA/CCG-400  ,19.8,16,D13
+171,AC/CCC-575R ,50.4,16,D13
+172,E5-1500R    ,71.5,16,D13
+173,CA/CCA-750R ,87.7,16,D13
+174,T12-790     ,104.5,16,D13
+175,CG/CTC-340  ,109.1,16,D13
+176,TC/CTG-500  ,116.3,16,D13
+177,TC/CCT-210R ,123.5,16,D13
+178,TT/CGA-820R ,131.3,16,D13
+179,TT/CGA-760R ,137.9,16,D13
+180,D15-470R    ,156.3,16,D13
+181,CT/CAG-760R ,164.6,16,D13
+182,CT/CAG-740R ,166.9,16,D13
+183,AA/CGT-510R ,186.3,16,D13
+184,Mk01_17     ,188.6,16,D13
+185,Mk01_18     ,209.2,16,D13
+186,AC/CCC-830R ,0,17,D14
+187,CG/CCT-395  ,12.7,17,D14
+188,CG/CCT-370  ,18.3,17,D14
+189,R7-350      ,48.4,17,D14
+190,CT/CAG-870R ,68.5,17,D14
+191,CC/CCT-225D ,75.3,17,D14
+192,CA/CCT-340R ,84.3,17,D14
+193,GT/CAG-660RD,90.4,17,D14
+194,CC/CCT-570  ,109.7,17,D14
+195,TC/CGA-540R ,134.1,17,D14
+196,GT/CAG-770R ,150.7,17,D14
+197,IS44-1100   ,180.7,17,D14
+198,TT/CGA-670R ,205.2,17,D14
+199,GT/CTT_830D ,0,18,D15
+200,CA/CTG_245  ,24.1,18,D15
+201,TA/CGA_455  ,33.2,18,D15
+202,TC/CCG_380R ,42.3,18,D15
+203,TT/CGT_640  ,49.2,18,D15
+204,AA/CGT_690  ,79.9,18,D15
+205,CG/CAG_470  ,84.7,18,D15
+206,CG/CCA_460R ,89.2,18,D15
+207,TC/CAG_440R ,109.1,18,D15
+208,AA/CGT_670R ,114.7,18,D15
+209,AA/CGT_650R ,114.7,18,D15
+210,AV14_1500R  ,123.7,18,D15
+211,TC/CAC_420  ,139.1,18,D15
+212,AG/CCG_800R ,162.7,18,D15
+213,TC/CGC_200  ,180.4,18,D15
+214,TT/CTG_160  ,186.8,18,D15
+215,A7_1350     ,198.8,18,D15
+216,TA/CGA-825  ,0,19,D16
+217,AG/CGC-780R ,20.4,19,D16
+218,AG/CGC-755R ,25,19,D16
+219,CC/CCT-460  ,49.9,19,D16
+220,AV17-1250   ,63,19,D16
+221,TC/CAG-405R ,74.7,19,D16
+222,GT/CAT-265R ,83.6,19,D16
+223,AG19-370    ,87.2,19,D16
+224,TC/CTG-730  ,99.4,19,D16
+225,TC/CTG-735  ,106.8,19,D16
+226,TC/CTG-745R ,111.7,19,D16
+227,TC/CTG-740R ,112.8,19,D16
+228,AG/CTT-570  ,116.1,19,D16
+229,AG/CTT-595  ,120.5,19,D16
+230,CG/CTT-280  ,131.7,19,D16
+231,CG/CAA-415R ,147.8,19,D16
+232,IS3-400R    ,171.3,19,D16
+233,IS45-150R   ,190.7,19,D16
+234,Z5-680R     ,0,20,D17
+235,A/15-620D   ,11.3,20,D17
+236,V4-1500R    ,19.1,20,D17
+237,C20-650R    ,28.1,20,D17
+238,AG/CGA-480R ,36.4,20,D17
+239,AG/CGA-330R ,38.7,20,D17
+240,CA/CCG-820R ,64,20,D17
+241,TC/CAG-350R ,68.6,20,D17
+242,AC/CCC-230R ,75.5,20,D17
+243,AG/CCG-660  ,98.5,20,D17
+244,AG/CCG-715  ,103.3,20,D17
+245,AG/CCG-690  ,107.9,20,D17
+246,Y11-620R    ,114.9,20,D17
+247,AI17-700    ,119.3,20,D17
+248,TC/CCC-380R ,130.6,20,D17
+249,TC/CCC-360R ,135,20,D17
+250,IS25-290    ,162.2,20,D17
+251,R11-1350R   ,0,21,D18
+252,CC/CCT-670  ,12.8,21,D18
+253,CT/CAG-735R ,44.4,21,D18
+254,AV19-1100   ,56.3,21,D18
+255,Q9-680R     ,69.5,21,D18
+256,G16-1100R   ,76.3,21,D18
+257,AG/CCT-340R ,86.6,21,D18
+258,CC/CTA-320  ,91.2,21,D18
+259,TA/CGA-840  ,102.6,21,D18
+260,C18-640R    ,114.8,21,D18
+261,AV6-620     ,120.3,21,D18
+262,TA/CGA-790  ,124.9,21,D18
+263,CG/CAA-655  ,144.1,21,D18
+264,D10-310R    ,0,22,D19
+265,AV7-1100R   ,6.7,22,D19
+266,GC/CTT-835  ,20.5,22,D19
+267,GT/CAG-205R ,42.2,22,D19
+268,T6-750      ,55.4,22,D19
+269,V1-980      ,84.2,22,D19
+270,AC/CCC-685  ,109.2,22,D19
+271,TA/CGA-650  ,119.7,22,D19
+272,CG/CGA-355R ,131.1,22,D19
+273,IS22-500R   ,147.2,22,D19
+274,AG/CTT-145  ,178.4,22,D19
+275,GC/CGC-470R ,183,22,D19