Dockerfile.dev

FROM ghcr.io/wtsi-npg/ub-18.04-baton-irods-4.2.11:latest

ARG PYTHON_VERSION=3.12

ENV DEBIAN_FRONTEND=noninteractive

USER root

RUN apt-get update && \
    apt-get install -q -y --no-install-recommends \
    apt-transport-https \
    apt-utils \
    build-essential \
    ca-certificates \
    curl \
    gcc \
    git \
    make \
    libbz2-dev \
    libffi-dev \
    libncurses-dev \
    libreadline-dev \
    libssl-dev \
    zlib1g-dev

# Install the iRODS icommands package because it's useful for interactions with \
# the server during development
RUN echo "deb [arch=amd64] https://packages.irods.org/apt/ $(lsb_release -sc) main" |\
    tee /etc/apt/sources.list.d/renci-irods.list && \
    apt-get update && \
    apt-get install -q -y --no-install-recommends \
    irods-icommands="4.2.11-1~$(lsb_release -sc)"

WORKDIR /app

# It's more practical to build from an iRODS client image and install recent Python
# than to build from a recent Python image and install iRODS clients.
ENV PYENV_ROOT="/app/.pyenv"

# Put PYENV first to ensure we use the pyenv-installed Python
ENV PATH="${PYENV_ROOT}/shims:${PYENV_ROOT}/bin:/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin"

COPY ./docker/install_pyenv.sh /app/docker/install_pyenv.sh

RUN /app/docker/install_pyenv.sh

ENV MAKE_OPTS="-j 8"

RUN pyenv install "$PYTHON_VERSION"
RUN pyenv global "$PYTHON_VERSION"

COPY requirements.txt test-requirements.txt /app/

RUN pip install --no-cache-dir -r requirements.txt && \
    pip install --no-cache-dir -r test-requirements.txt

COPY . /app

RUN pip install --no-cache-dir . && \
    git status && \
    ls -al

RUN chown -R appuser:appuser /app

USER appuser

ENTRYPOINT ["/app/docker/entrypoint.sh"]

CMD ["/bin/bash"]