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MANIFEST
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.dir-locals
bin/npg_external_report2ml_warehouse
bin/npg_irods_locations2ml_warehouse
bin/npg_manifest4study
bin/npg_mlwarehouse_fkrepair
bin/npg_mlwarehouse_run_delete
bin/npg_pacbio_run_qcstate2mlwarehouse
bin/npg_pacbio_runs2mlwarehouse
bin/npg_products2mlwarehouse
bin/npg_run_info2mlwarehouse
bin/npg_run_params2mlwarehouse
bin/npg_runs2mlwarehouse
bin/warehouse_loader_launcher
Build.PL
Changes
lib/npg_warehouse/fk_repair.pm
lib/npg_warehouse/loader/autoqc.pm
lib/npg_warehouse/loader/base.pm
lib/npg_warehouse/loader/fqc.pm
lib/npg_warehouse/loader/irods_location.pm
lib/npg_warehouse/loader/npg.pm
lib/npg_warehouse/loader/product.pm
lib/npg_warehouse/loader/product_limited.pm
lib/npg_warehouse/loader/qc.pm
lib/npg_warehouse/loader/run.pm
lib/npg_warehouse/loader/run_files.pm
lib/npg_warehouse/loader/run_info.pm
lib/npg_warehouse/loader/pacbio/base.pm
lib/npg_warehouse/loader/pacbio/product.pm
lib/npg_warehouse/loader/pacbio/run.pm
lib/npg_warehouse/loader/pacbio/qc_state.pm
MANIFEST This list of files
README
scripts/npg_mlwarehouse_link_products
t/00-critic.t
t/00-distribution.t
t/00-pod.t
t/00-podcoverage.t
t/00-scripts_compile.t
t/10-npg_warehouse-fkrepair.t
t/10-npg_warehouse-loader-autoqc.t
t/10-npg_warehouse-loader-fqc.t
t/10-npg_warehouse-loader-irods-location.t
t/10-npg_warehouse-loader-npg.t
t/10-npg_warehouse-loader-pacbio-run.t
t/10-npg_warehouse-loader-pacbio-run-qc_state.t
t/10-npg_warehouse-loader-product_limited.t
t/10-npg_warehouse-loader-qc.t
t/10-npg_warehouse-loader-run.t
t/10-npg_warehouse-loader-run_files.t
t/10-npg_warehouse-loader-run_info.t
t/20-npg_warehouse-loader-run.t
t/data/fixtures/npg/000-InstrumentStatusDict.yml
t/data/fixtures/npg/000-RunStatusDict.yml
t/data/fixtures/npg/000-Tag.yml
t/data/fixtures/npg/000-User.yml
t/data/fixtures/npg/100-InstrumentFormat.yml
t/data/fixtures/npg/200-Instrument.yml
t/data/fixtures/npg/300-Run.yml
t/data/fixtures/npg/400-RunLane.yml
t/data/fixtures/npg/400-RunStatus.yml
t/data/fixtures/npg/400-TagRun.yml
t/data/fixtures/npgqc/100-SeqComponent.yml
t/data/fixtures/npgqc/100-SeqComposition.yml
t/data/fixtures/npgqc/200-SeqComponentComposition.yml
t/data/fixtures/npgqc/300-InsertSize.yml
t/data/fixtures/npgqc/300-QXYield.yml
t/data/fixtures/npgqc/300-TagMetrics.yml
t/data/fixtures/npgqc/ClusterDensity.yml
t/data/fixtures/npgqc/MqcLibraryOutcomeDict.yml
t/data/fixtures/npgqc/MqcOutcomeDict.yml
t/data/fixtures/npgqc/UqcOutcomeDict.yml
t/data/fixtures/wh/000-Sample.yml
t/data/fixtures/wh/000-Study.yml
t/data/fixtures/wh/100-IseqFlowcell.yml
t/data/fixtures/wh_npg/200-IseqProductMetric.yml
t/data/fixtures/wh_npg/200-IseqRunLaneMetric.yml
t/data/fixtures/wh_npg/200-SeqProductIrodsLocation.yml
t/data/fixtures/wh_pacbio/000-Sample.yml
t/data/fixtures/wh_pacbio/000-Study.yml
t/data/fixtures/wh_pacbio/100-PacBioRun.yml
t/data/fixtures/wh_pacbio2/100-Sample.yml
t/data/fixtures/wh_pacbio2/100-Study.yml
t/data/fixtures/wh_pacbio2/200-PacBioRun.yml
t/data/fixtures/wh_pacbio2/200-PacBioRunWellMetric.yml
t/data/fixtures/wh_pacbio2/300-PacBioProductMetric.yml
t/data/irods_locations/new_and_update.json
t/data/irods_locations/new_only.json
t/data/irods_locations/new_same_coll.json
t/data/irods_locations/new_same_id.json
t/data/irods_locations/new_same_row.json
t/data/irods_locations/update_only.json
t/data/irods_locations/update_same_row.json
t/data/pacbio/langqc/README.md
t/data/pacbio/langqc/TRACTION-RUN-333.json
t/data/pacbio/langqc/TRACTION-RUN-351.json
t/data/pacbio/langqc/TRACTION-RUN-92.json
t/data/pacbio/smrtlink/dataset_ccsreads/b25f237e-aae3-4e29-b3ac-982d542cf784.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/003d9713-7240-4e82-9d39-570964487cbb.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/0db5e2da-7b54-47dc-9c04-53bde0a80a3f.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/16ddd726-7931-43cb-8521-0b7ca2cf2cf5.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/1b70315e-03de-4344-bc16-0db4683e675e.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/2cd2c381-6c75-4871-a0fe-f0fdb2fe1592.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/3656ec2e-8765-42d5-9ee6-af93d940740a.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/3ac4e562-fe29-4b8b-b409-3382a525835a.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/4405081b-5e7e-42f1-a0a3-df8cafd8b90e.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/42cab92b-fee8-4abb-9980-763fdd1ed726.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/4caf5d4d-f993-8512-0a3e-ff69a3571fbf.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/4ffcbae1-4afe-48fc-836a-f25d507fcedb.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/513ebe5a-f398-457a-9e9d-c2cc659c4757.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/605d3b33-8705-49cb-b039-79309933ebbc.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/634500ae-3fac-43e2-8eee-58db46bb65ec.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/656ec2e-8765-42d5-9ee6-af93d940740a.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/6877122c-dc91-4e6b-93c0-45abee4c0a9b.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/6ec38727-870e-4729-bb29-c8bec79610a3.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/71a2402f-4bc6-405f-889f-4f7601353248.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/74f45b56-780f-48cc-9c20-69a89ba28731.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/77547c3a-44d9-474e-8d80-9fb2d05a2c1c.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/7d2b8d76-7dbe-4b7c-a964-368294aa53ac.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/88fa9046-7bbb-4465-a6cd-07647357dabd.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/90513ff4-94aa-418a-aef2-041daccd46db.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/9e2ef574-d2e2-4d15-bf4c-8c59c8f3f001.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/9e377088-f9eb-4a2e-bdd9-ea01f9a77159.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/a484c702-b837-4c31-b13f-a18a1d77206f.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/b25f237e-aae3-4e29-b3ac-982d542cf784.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/b5790be4-8128-4701-8a38-80fa670b3998.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/d3aa29a9-d20d-4c77-b956-c52e9aafc55f.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/d5a11829-c095-43cc-a6c3-f7cdf36bdbae.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/e671b2c3-4344-4324-882a-af525461f619.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/f1d7398d-d995-4328-be57-7e8f11d3e6e3.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/fbd6e4f9-58a9-4f74-8542-7fd080d9a9b9.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/fe968b2d-5739-4507-9694-a965d88c5ca0.json
t/data/pacbio/smrtlink/dataset_ccsreads_reports/fea71669-3c5c-4ce3-a41c-e85bccc6f9a9.json
t/data/pacbio/smrtlink/dataset_reports/79174/1b70315e-03de-4344-bc16-0db4683e675e/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/79174/1b70315e-03de-4344-bc16-0db4683e675e/ccs.report.json
t/data/pacbio/smrtlink/dataset_reports/79174/1b70315e-03de-4344-bc16-0db4683e675e/control.report.json
t/data/pacbio/smrtlink/dataset_reports/79174/1b70315e-03de-4344-bc16-0db4683e675e/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/79174/1b70315e-03de-4344-bc16-0db4683e675e/raw_data.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/4caf5d4d-f993-8512-0a3e-ff69a3571fbf/barcode_ccs.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/4caf5d4d-f993-8512-0a3e-ff69a3571fbf/ccs_processing.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/4caf5d4d-f993-8512-0a3e-ff69a3571fbf/ccs.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/511f764d-e4d5-4dca-b24f-0fd2bc43c1f1/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/511f764d-e4d5-4dca-b24f-0fd2bc43c1f1/control.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/511f764d-e4d5-4dca-b24f-0fd2bc43c1f1/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/511f764d-e4d5-4dca-b24f-0fd2bc43c1f1/raw_data.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/55d01777-12b2-4204-a1e5-05c7ae07f5f6/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/55d01777-12b2-4204-a1e5-05c7ae07f5f6/control.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/55d01777-12b2-4204-a1e5-05c7ae07f5f6/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/55d01777-12b2-4204-a1e5-05c7ae07f5f6/raw_data.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/74f45b56-780f-48cc-9c20-69a89ba28731/barcode_ccs.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/74f45b56-780f-48cc-9c20-69a89ba28731/ccs_processing.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/74f45b56-780f-48cc-9c20-69a89ba28731/ccs.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/a3cf64c5-75bc-4102-9f41-48362d1d5f50/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/a3cf64c5-75bc-4102-9f41-48362d1d5f50/control.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/a3cf64c5-75bc-4102-9f41-48362d1d5f50/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/a3cf64c5-75bc-4102-9f41-48362d1d5f50/raw_data.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/c0fefab7-a61f-48ac-9cde-1237e8a8d313/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/c0fefab7-a61f-48ac-9cde-1237e8a8d313/control.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/c0fefab7-a61f-48ac-9cde-1237e8a8d313/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/80685/c0fefab7-a61f-48ac-9cde-1237e8a8d313/raw_data.report.json
t/data/pacbio/smrtlink/dataset_reports/80863/50039d88-90cd-4477-b509-0a1e803aece9/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/80863/50039d88-90cd-4477-b509-0a1e803aece9/control.report.json
t/data/pacbio/smrtlink/dataset_reports/80863/50039d88-90cd-4477-b509-0a1e803aece9/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/80863/50039d88-90cd-4477-b509-0a1e803aece9/raw_data.report.json
t/data/pacbio/smrtlink/dataset_reports/80863/7f1599a1-6766-4702-bf4b-f496d59e5ebf/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/80863/7f1599a1-6766-4702-bf4b-f496d59e5ebf/control.report.json
t/data/pacbio/smrtlink/dataset_reports/80863/7f1599a1-6766-4702-bf4b-f496d59e5ebf/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/80863/7f1599a1-6766-4702-bf4b-f496d59e5ebf/raw_data.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/23/barcode_preview_report.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/4/barcode_preview_report.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/barcodes.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/ccs.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/control.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/detect_cpg_methyl.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/m84093_240215_123620_s3.ccs_report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-1125/6ec38727-870e-4729-bb29-c8bec79610a3/raw_data.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-142/35b9ab51-8b4d-4c90-8ad2-a8e83f451c84/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-142/35b9ab51-8b4d-4c90-8ad2-a8e83f451c84/barcode.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-142/35b9ab51-8b4d-4c90-8ad2-a8e83f451c84/ccs.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-142/35b9ab51-8b4d-4c90-8ad2-a8e83f451c84/control.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-142/35b9ab51-8b4d-4c90-8ad2-a8e83f451c84/detect_cpg_methyl.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-142/35b9ab51-8b4d-4c90-8ad2-a8e83f451c84/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-142/35b9ab51-8b4d-4c90-8ad2-a8e83f451c84/m64089e_220615_173331.ccs_reports.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-142/35b9ab51-8b4d-4c90-8ad2-a8e83f451c84/raw_data.report.json
t/data/pacbio/smrtlink/datasets/ccsreads.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-219/6877122c-dc91-4e6b-93c0-45abee4c0a9b/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-219/6877122c-dc91-4e6b-93c0-45abee4c0a9b/barcode.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-219/6877122c-dc91-4e6b-93c0-45abee4c0a9b/ccs.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-219/6877122c-dc91-4e6b-93c0-45abee4c0a9b/control.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-219/6877122c-dc91-4e6b-93c0-45abee4c0a9b/loading.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-219/6877122c-dc91-4e6b-93c0-45abee4c0a9b/m64089e_220823_150947.ccs_reports.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-219/6877122c-dc91-4e6b-93c0-45abee4c0a9b/raw_data.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-539/d3aa29a9-d20d-4c77-b956-c52e9aafc55f/adapter.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-539/d3aa29a9-d20d-4c77-b956-c52e9aafc55f/barcode.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-539/d3aa29a9-d20d-4c77-b956-c52e9aafc55f/ccs.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-539/d3aa29a9-d20d-4c77-b956-c52e9aafc55f/control.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-539/d3aa29a9-d20d-4c77-b956-c52e9aafc55f/detect_cpg_methyl.report.json
t/data/pacbio/smrtlink/dataset_reports/TRACTION-RUN-539/d3aa29a9-d20d-4c77-b956-c52e9aafc55f/loading.report.json
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t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane3/plex8/qc/6624_3#8.bam_flagstats.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane3/qc/6624_3.bam_flagstats.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane3/qc/6624_3.tag_decode_stats.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane4/plex0/qc/6624_4#0.qX_yield.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane4/qc/6624_4.bam_flagstats.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane4/qc/6624_4.qX_yield.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane4/qc/6624_4.tag_metrics.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane5/qc/6624_5.bam_flagstats.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane5/qc/6624_5.tag_metrics.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane6/qc/6624_6.bam_flagstats.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane7/qc/6624_7.bam_flagstats.json
t/data/runfolders/110731_HS17_06624_A_B00T5ACXX/Data/Intensities/BAM_basecalls_20110811-145428/no_cal/archive/lane8/qc/6624_8.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane1/qc/6642_1.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex0/qc/6642_2#0.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex0/qc/6642_2#0_human.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex1/qc/6642_2#1.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex1/qc/6642_2#1_human.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex2/qc/6642_2#2.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex2/qc/6642_2#2_human.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex3/qc/6642_2#3.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex3/qc/6642_2#3_human.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex4/qc/6642_2#4.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex4/qc/6642_2#4_human.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex5/qc/6642_2#5.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex5/qc/6642_2#5_xahuman.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex6/qc/6642_2#6.substitution_metrics.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex6/qc/6642_2#6_yhuman.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/plex6/qc/6642_2#6_yhuman.substitution_metrics.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane2/qc/6642_2.tag_metrics.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane3/qc/6642_3.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane4/qc/6642_4.bam_flagstats.json
t/data/runfolders/110804_HS22_06642_A_B020JACXX/Data/Intensities/BAM_basecalls_20110813-160456/no_cal/archive/lane4/qc/6642_4.verify_bam_id.json
t/data/runfolders/180130_MS6_24975_A_MS6073474-300V2/Data/Intensities/BAM_basecalls_20180221-165427/no_cal/archive/lane1/plex1/qc/24975_1#1.rna_seqc.json
t/data/runfolders/180130_MS6_24975_A_MS6073474-300V2/Data/Intensities/BAM_basecalls_20180221-165427/no_cal/archive/lane1/qc/24975_1.tag_metrics.json
t/data/runfolders/180423_MS7_25710_A_MS6392545-300V2/Data/Intensities/BAM_basecalls_20180501-112028/no_cal/archive/lane1/plex57/qc/25710_1#57.ncov2019-artic-nf.generic.json
t/data/runfolders/180423_MS7_25710_A_MS6392545-300V2/Data/Intensities/BAM_basecalls_20180501-112028/no_cal/archive/lane1/plex58/qc/25710_1#58.ncov2019-artic-nf_ampliconstats.generic.json
t/data/runfolders/180423_MS7_25710_A_MS6392545-300V2/Data/Intensities/BAM_basecalls_20180501-112028/no_cal/archive/lane1/plex59/qc/25710_1#59.ncov2019-artic-nf.generic.json
t/data/runfolders/180423_MS7_25710_A_MS6392545-300V2/Data/Intensities/BAM_basecalls_20180501-112028/no_cal/archive/lane1/plex59/qc/25710_1#59.ncov2019-artic-nf_ampliconstats.generic.json
t/data/runfolders/180423_MS7_25710_A_MS6392545-300V2/Data/Intensities/BAM_basecalls_20180501-112028/no_cal/archive/lane1/plex59/qc/25710_1#59.other_pipeline.generic.json
t/data/runfolders/180423_MS7_25710_A_MS6392545-300V2/Data/Intensities/BAM_basecalls_20180501-112028/no_cal/archive/lane1/plex60/qc/25710_1#60.genotype_call.json
t/data/runfolders/180423_MS7_25710_A_MS6392545-300V2/Data/Intensities/BAM_basecalls_20180501-112028/no_cal/archive/lane1/plex60/qc/25710_1#60.ncov2019-artic-nf.generic.json
t/data/runfolders/180423_MS7_25710_A_MS6392545-300V2/Data/Intensities/BAM_basecalls_20180501-112028/no_cal/archive/lane1/plex60/qc/25710_1#60.ncov2019-artic-nf_ampliconstats.generic.json
t/data/runfolders/180423_MS7_25710_A_MS6392545-300V2/Data/Intensities/BAM_basecalls_20180501-112028/no_cal/archive/lane1/qc/25710_1.tag_metrics.json
t/data/runfolders/181008_HX1_27116_B_HNYKNCCXY/Data/Intensities/BAM_basecalls_20181015-171739/no_cal/archive/lane1/plex1/qc/27116_1#1.bam_flagstats.json
t/data/runfolders/181008_HX1_27116_B_HNYKNCCXY/Data/Intensities/BAM_basecalls_20181015-171739/no_cal/archive/lane1/plex1/qc/27116_1#1.bcfstats.json
t/data/runfolders/with_merges/Data/Intensities/BAM_basecalls_20180805-013153/no_cal/archive/26291_2.tag_metrics.json
t/data/runfolders/with_merges/Data/Intensities/BAM_basecalls_20180805-013153/no_cal/archive/lane1/qc/26291_1.interop.json
t/data/runfolders/with_merges/Data/Intensities/BAM_basecalls_20180805-013153/no_cal/archive/lane1/qc/26291_1.ref_match.json
t/data/runfolders/with_merges/Data/Intensities/BAM_basecalls_20180805-013153/no_cal/archive/lane1/qc/26291_1.tag_metrics.json
t/data/runfolders/with_merges/Data/Intensities/BAM_basecalls_20180805-013153/no_cal/archive/plex1/qc/26291#1.insert_size.json
t/scripts/generate_pac_bio_id
t/perlcriticrc
t/util.pm