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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(create_config)
export(create_experimentqc_object)
export(create_qc_reports)
export(create_sampleqc_object)
export(create_sge_object)
export(import_sge_files)
export(load_config)
export(read_sge_file)
export(select_objects)
exportClasses(SGE)
exportClasses(experimentQC)
exportClasses(sampleQC)
exportMethods(format_count)
exportMethods(qcout_expqc_all)
exportMethods(qcout_expqc_corr)
exportMethods(qcout_expqc_deseq)
exportMethods(qcout_samqc_accepted)
exportMethods(qcout_samqc_all)
exportMethods(qcout_samqc_badseqs)
exportMethods(qcout_samqc_cutoffs)
exportMethods(qcout_samqc_libcov)
exportMethods(qcout_samqc_meta)
exportMethods(qcout_samqc_missing)
exportMethods(qcout_samqc_pos_anno)
exportMethods(qcout_samqc_pos_cov)
exportMethods(qcout_samqc_readlens)
exportMethods(qcout_samqc_results)
exportMethods(qcout_samqc_total)
exportMethods(qcplot_expqc_all)
exportMethods(qcplot_expqc_deseq_fc)
exportMethods(qcplot_expqc_deseq_fc_pos)
exportMethods(qcplot_expqc_sample_corr)
exportMethods(qcplot_expqc_sample_pca)
exportMethods(qcplot_samqc_accepted)
exportMethods(qcplot_samqc_all)
exportMethods(qcplot_samqc_clusters)
exportMethods(qcplot_samqc_gini)
exportMethods(qcplot_samqc_pos_anno)
exportMethods(qcplot_samqc_pos_cov)
exportMethods(qcplot_samqc_readlens)
exportMethods(qcplot_samqc_total)
exportMethods(run_experiment_qc)
exportMethods(run_experiment_qc_all_lfc)
exportMethods(run_experiment_qc_lib_lfc)
exportMethods(run_sample_qc)
exportMethods(sge_qc_stats)
exportMethods(sge_stats)
exportMethods(show)
exportMethods(show_qc_stats)
exportMethods(show_stats)
import(Ckmeans.1d.dp)
import(DEGreport)
import(DESeq2)
import(apeglm)
import(configr)
import(corrplot)
import(data.table)
import(dendextend)
import(ggbeeswarm)
import(ggcorrplot)
import(ggplot2)
import(gplots)
import(htmltools)
import(methods)
import(plotly, except = last_plot)
import(reactable)
import(sparkline)
import(vroom)
importFrom(gtools,mixedsort)
importFrom(reshape2,melt)
importFrom(see,geom_violinhalf)