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Commits on Aug 26, 2024

• Merge pull request #233 from seqan/h-2-patch-2

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• Update README.rst

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Commits on Aug 5, 2024

• Merge pull request #232 from h-2/prerel301

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• [ci] update macos runner to -13

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Commits on Aug 4, 2024

• [doc] fix documentation for --input-alphabet

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• [misc] update citation and copyright

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• [misc] bump version

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Commits on Jul 22, 2024

• Merge pull request #230 from seqan/h-2-patch-1

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Commits on Jul 21, 2024

• Update README.rst

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Commits on Jan 9, 2024

• Merge pull request #227 from h-2/taxIds

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• [fix] check presence of taxtree in index

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Commits on Dec 20, 2023

• Merge pull request #225 from sarahet/fasta_formats

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Commits on Dec 19, 2023

• Fix zlib support for static macos build

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Commits on Dec 14, 2023

• Merge pull request #224 from sarahet/fasta_formats

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• Remove unused file from test data

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• Allow .fna and .faa fasta extensions

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Commits on Nov 26, 2023

• Merge pull request #222 from h-2/align_bug

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• [test] update link to testdata repo

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• [test] change output file names to be identical to input filenames

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• [feature] add pairs profiles

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• [fix] exception handling of the sharg-parser

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• [fix] pairs counting

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• [misc] redesign widening, merging and prefilter of matches; change band to sqrt

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Commits on Nov 17, 2023

• [fix] alignment bug

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Commits on Jul 25, 2023

• Merge pull request #221 from h-2/remove_dispatcher

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• [misc] remove dispatcher; clean-up cmake

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Commits on Jul 24, 2023

• Merge pull request #220 from h-2/fixstatic

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Commits on Jul 21, 2023

• [infra] add gcc13 tests, remove gcc10

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• [misc] track biocpp changes and gcc13

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• [submodule] update biocpp modules

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• Merge pull request #219 from h-2/fixstatic

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Commits on Jul 17, 2023

• [fix] static builds

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Commits on Jul 13, 2023

• Merge pull request #216 from h-2/bifm_macro

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Commits on Jul 12, 2023

• [misc] deactivate BIFM by default

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• Merge pull request #215 from sarahet/default_eval

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