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Commits on Dec 15, 2025

• fam plotting: update docs with -keep_fam_id info

  

  Amy Williams

  committed
  e1240b1

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Commits on Dec 6, 2025

• fam plotting: remove the family ids to shorten labels (-keep_fam_id disables)

  

  Amy Williams

  committed
  7460e4e

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Commits on Dec 13, 2024

• Merge pull request #22 from williamslab/set_founders

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  williamslab

  authored
  01d26d5

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• Add --set_founders option

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  Amy Williams

  committed
  5843819

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Commits on Oct 18, 2024

• shuffHaps as <vec<vec>>

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  williamscole

  committed
  aaf3d65

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Commits on Aug 25, 2024

• accept either [base name] or [base name].fam as input

  

  Amy Williams

  committed
  1b58e53

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• bump version number

  

  Amy Williams

  committed
  2d3559a

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• add --dry_run; rename fam variables to rep (replicate)

  

  Amy Williams

  committed
  0c0186b

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Commits on Jul 31, 2024

• bump version number

  

  Amy Williams

  committed
  9ca6166

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• BUGFIX: always print Ped-sim founder ids to .ids file

  

  Amy Williams

  committed
  4da257c

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Commits on Dec 2, 2022

• Merge pull request #18 from Lirazk/va_args

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  williamslab

  authored
  c32e6ac

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Commits on Nov 23, 2022

• Corrected undefined behavior where va_list is used twice.

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  Lirazk

  committed
  dc56e8c

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Commits on Jan 20, 2022

• add note about version 1.4

  

  Amy Williams

  committed
  86937a3

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• BUGFIX: pick one haplotype for het male X alleles

  

  Amy Williams

  committed
  9ad94c9

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Commits on Jan 2, 2022

• BUGFIX: don't reference memcpy in make 'distribute' target

  

  Amy Williams

  committed
  b0368b9

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Commits on Dec 31, 2021

• bump version number

  

  Amy Williams

  committed
  833d856

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• Document/provide Makefile for using GSL instead of boost

  

  Amy Williams

  committed
  75338ec

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• Remove unnecessary memcpy.c

  

  Amy Williams

  committed
  8569c3f

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Commits on Nov 25, 2021

• Merge pull request #17 from stephenturner/master

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  williamslab

  authored
  a4b4863

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Commits on Nov 24, 2021

• bump version number and release date

  stephenturner

  committed
  6ae17e6

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• include stdint.h header

  stephenturner

  committed
  c534021

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Commits on Nov 7, 2021

• minor BUGFIX: print error when assigning an out of bounds branch

  

  Amy Williams

  committed
  210c355

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Commits on Sep 30, 2021

• Print warning if sexes file given but no chrX map

  

  Amy Williams

  committed
  82c4d47

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Commits on May 4, 2021

• BUGFIX: ensure sex assignments from bottom generation apply

  

  Amy Williams

  committed
  ac82c2a

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• check for new/malloc returning NULL and give out of memory error

  

  Amy Williams

  committed
  d470434

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Commits on May 1, 2021

• add sex assignments to Recent updates

  

  Amy Williams

  committed
  a3a59ce

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• support for branch-specific sex assignments in the def file

  

  Amy Williams

  committed
  9d1cb64

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Commits on Apr 15, 2021

• optionally store basic IBD segment data in vector

  

  Amy Williams

  committed
  a60dbb2

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Commits on Apr 13, 2021

• for male X hets, select random allele independent of other random values

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  williamslab

  committed
  bfd7dc7

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Commits on Mar 16, 2021

• don't crash if there's an input VCF but no chrX map and no sexes file

  

  Amy Williams

  committed
  988577b

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Commits on Mar 12, 2021

• recent updates section re: chrX support

  

  Amy Williams

  committed
  40c7372

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Commits on Mar 11, 2021

• ignore refined_mf*.simmap

  

  Amy Williams

  committed
  4da8c4a

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• full support for chrX (i.e., VCFs)

  

  Amy Williams

  committed
  de97fa8

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Commits on Mar 10, 2021

• function to indicate whether the X chromosome genetic map was read

  

  Amy Williams

  committed
  7b6824b

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Commits on Mar 9, 2021

• free readdef buffer

  

  Amy Williams

  committed
  9d68841

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