quiting accuracy test on first fail

will-rowe · will-rowe · commit 96d9232103f7 · 2020-04-23T15:16:04.000+01:00
diff --git a/testing/run_accuracy_tests.sh b/testing/run_accuracy_tests.sh
@@ -5,7 +5,7 @@
 # The reads were generated using randomreads.sh (bbmap) with the command:
 # randomreads.sh ref=../../../../db/full-ARG-databases/arg-annot-db/argannot-args.fna out=${NUM_READS}-test-reads.fq length=$READ_LEN  reads=$NUM_READS maxsnps=0 maxinss=0 maxdels=0 maxsubs=0 adderrors=false
 #
-#
+set -e
 
 # test parameters
 TESTDIR=tmp-for-groot-accuracy

Original file line number	Diff line number	Diff line change
`@@ -5,7 +5,7 @@`
`5`	`5`	`# The reads were generated using randomreads.sh (bbmap) with the command:`
`6`	`6`	`# randomreads.sh ref=../../../../db/full-ARG-databases/arg-annot-db/argannot-args.fna out=${NUM_READS}-test-reads.fq length=$READ_LEN reads=$NUM_READS maxsnps=0 maxinss=0 maxdels=0 maxsubs=0 adderrors=false`
`7`	`7`	`#`
`8`		`-#`
	`8`	`+set -e`
`9`	`9`
`10`	`10`	`# test parameters`
`11`	`11`	`TESTDIR=tmp-for-groot-accuracy`