bb_bedpeData.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{bb_bedpeData}
\alias{bb_bedpeData}
\title{BentoBox example BEDPE data}
\format{
a dataframe in BEDPE format
\describe{
\item{chrom1}{The name of the chromosome on which the first end of the feature exists.}
\item{start1}{The starting position of the first end of the feature on chrom1.}
\item{end1}{The ending position of the first end of the feature on chrom1.}
\item{chrom2}{The name of the chromosome on which the second end of the feature exists.}
\item{start2}{The starting position of the second end of the feature on chrom2.}
\item{end2}{The ending position of the second end of the feature on chrom2.}
}
}
\usage{
data("bb_bedpeData")
}
\description{
A dataset listing interaction data along genomic coordinates in the region chr21:28000000-30300000 according to the hg19 genome build.
This data represents called DNA loops in the IMR90 cell line.
}
\references{
Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824.
(\href{https://pubmed.ncbi.nlm.nih.gov/25497547/}{PubMed})
}
\keyword{datasets}