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@westlake-repl

westlake-repl

README.md

Hi there 👋

🙋‍♀️ This is Westlake Representation Learning Lab, led by Dr. Fajie Yuan.

👩‍💻 We're focusing on two major research directions:

  • AI4Biology.
  • Taditional AI research

🤗 Our lab is now recruiting self-motivated interns / full-time (posdoc/assistant) researchers/ Ph.D. students in machine learning and Life AI. 实验室招聘科研助理，实习生，博士生和博士后，请邮件联系.

西湖大学25年秋季博士招生，有1个名额，欢迎申请和联系

We also have PhD places for students outside of China for the 2026 season. Feel free to contact!

🛠️ Tools: AI tools for protein research

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  1. SaProt SaProt Public

    Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

    Python 444 43

  2. SaprotHub SaprotHub Public

    Making Protein Modeling Accessible to All Biologists

    Jupyter Notebook 111 13

  3. Denovo-Pinal Denovo-Pinal Public

    Text-guided protein design

    Python 48 4

  4. Evolla Evolla Public

    ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.

    Python 47 4

  5. ProTrek ProTrek Public

    ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

    Python 101 8

  6. MicroLens MicroLens Public

    A Large Short-video Recommendation Dataset with Raw Text/Audio/Image/Videos (Talk Invited by DeepMind).

    Python 184 15

Repositories

Showing 10 of 22 repositories
  • SaprotHub Public

    Making Protein Modeling Accessible to All Biologists

    westlake-repl/SaprotHub’s past year of commit activity
    Jupyter Notebook 111 MIT 13 2 0 Updated May 6, 2025
  • ProTrek Public

    ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

    westlake-repl/ProTrek’s past year of commit activity
    Python 101 MIT 8 1 0 Updated Apr 30, 2025
  • ESM-Ezy Public
    westlake-repl/ESM-Ezy’s past year of commit activity
    Python 23 MIT 1 1 0 Updated Apr 22, 2025
  • NRPSTransformer Public

    Transformer Based Nonribosomal Peptide Synthetases Predictor

    westlake-repl/NRPSTransformer’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 18, 2025
  • .github Public
    westlake-repl/.github’s past year of commit activity
    0 0 0 0 Updated Apr 9, 2025
  • Denovo-Pinal Public

    Text-guided protein design

    westlake-repl/Denovo-Pinal’s past year of commit activity
    Python 48 4 1 0 Updated Apr 6, 2025
  • SaProt Public

    Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

    westlake-repl/SaProt’s past year of commit activity
    Python 444 MIT 43 21 0 Updated Mar 29, 2025
  • Cryo-IEF Public

    A comprehensive foundation model for cryo-EM image processing

    westlake-repl/Cryo-IEF’s past year of commit activity
    Python 20 MIT 0 0 0 Updated Mar 20, 2025
  • LeanVAE Public

    LeanVAE: An Ultra-Efficient Reconstruction VAE for Video Diffusion Models

    westlake-repl/LeanVAE’s past year of commit activity
    Python 12 MIT 1 0 0 Updated Mar 20, 2025
  • PixelRec Public

    A Large-scale Multimodal Dataset for recommender System

    westlake-repl/PixelRec’s past year of commit activity
    Python 139 MIT 8 0 0 Updated Mar 19, 2025
View all repositories

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