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plotgeneloadings, runGSEA, plotWordClouds error #275

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Prathyusha-konda opened this issue Oct 19, 2022 · 0 comments

Prathyusha-konda commented Oct 19, 2022 •

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Hi, I integrated scRNA datasets using the tutorial for "Integrating Seurat objects using LIGER" (https://htmlpreview.github.io/?https://github.com/satijalab/seurat.wrappers/blob/master/docs/liger.html). I then converted the integrated seurat object to liger object using seuratToLiger before plotting GeneLoadings and running Wilcoxon test as per this tutorial (http://htmlpreview.github.io/?https://github.com/welch-lab/liger/blob/master/vignettes/Integrating_multi_scRNA_data.html). But I'm getting the following error with all downstream commands related to plotGeneLoadings, runGSEA, plotWordClouds, etc. Can you please let me know how to go about this?

gene_loadings <- plotGeneLoadings(ligerex3, do.spec.plot = FALSE, return.plots = TRUE)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 't': attempt to select less than one element in get1index

Prathyusha-konda changed the title ~~plotgeneloadings error~~ plotgeneloadings, runGSEA, plotWordClouds error

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