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@wejlab

W. Evan Johnson Lab

This is the main GitHub home for the research and software projects from Evan Johnson's Lab

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  1. animalcules animalcules Public

    R shiny app for interactive microbiome analysis

    R 55 21

  2. MetaScope MetaScope Public

    An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)

    R 19 8

  3. TBSignatureProfiler TBSignatureProfiler Public

    Profile RNA-seq data using published TB gene signatures

    R 12 12

  4. BatchQC BatchQC Public

    Batch Effects Quality Control Software

    R 8 12

  5. ASSIGN ASSIGN Public

    Adaptive Signature Selection and InteGratioN

    R 2

  6. PathoStat PathoStat Public

    Forked from mani2012/PathoStat

    The purpose of this package is to perform Statistical Analysis on the PathoScope generated reports files.

    R 2

Repositories

Showing 10 of 19 repositories
  • jlabwiki Public

    A wiki of knowledge for Johnson Lab members

    wejlab/jlabwiki’s past year of commit activity
    0 1 0 0 Updated May 22, 2025
  • singleCellTK Public Forked from compbiomed/singleCellTK

    Interactively Analyze scRNA-Seq Data

    wejlab/singleCellTK’s past year of commit activity
    R 0 80 0 0 Updated May 14, 2025
  • BatchQC Public

    Batch Effects Quality Control Software

    wejlab/BatchQC’s past year of commit activity
    R 8 12 8 1 Updated May 13, 2025
  • MetaScope Public

    An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)

    wejlab/MetaScope’s past year of commit activity
    R 19 GPL-3.0 8 1 0 Updated May 4, 2025
  • TBSignatureProfiler Public

    Profile RNA-seq data using published TB gene signatures

    wejlab/TBSignatureProfiler’s past year of commit activity
    R 12 12 0 0 Updated Apr 30, 2025
  • TBSignatureProfiler-docs Public

    A repository to host the files for the TBSignatureProfiler website.

    wejlab/TBSignatureProfiler-docs’s past year of commit activity
    0 0 0 0 Updated Apr 30, 2025
  • metascope-docs Public

    Repository holding documents for the MetaScope website

    wejlab/metascope-docs’s past year of commit activity
    0 0 0 0 Updated Apr 25, 2025
  • LegATo Public

    An R-based Longitudinal mEtaGenomic Analysis Toolkit for microbiome data

    wejlab/LegATo’s past year of commit activity
    R 2 1 0 0 Updated Apr 7, 2025
  • LegATo-docs Public

    Docs for the LegATo website

    wejlab/LegATo-docs’s past year of commit activity
    0 0 0 0 Updated Oct 30, 2024
  • curatedTBExplorer Public

    This is the repository for the curatedTBExplorer shiny interface to view and analyze the curatedTBData

    wejlab/curatedTBExplorer’s past year of commit activity
    R 1 0 4 (1 issue needs help) 0 Updated Oct 2, 2024
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