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Liya WangLiya Wang
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Fixed Association Workflow
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agavedancer/public/assets/AllpathsLG_small-genomes-48777u1.json

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agavedancer/public/assets/AllpathsLG_stampede-48777u1.json

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agavedancer/public/assets/AlphaSim-1.04u1.json

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{"id":"be58ead0-6c45-43a2-b54b-8fdda947e4b9","name":"Association.workflow","description":"","steps":[{"id":0,"appId":"ConvertTraitID-0.0.0","jobId":"7541259367061197286-242ac115-0001-007","inputs":{"trait":"agave://data.sciapps.org/example_data/gwas_raw/height.txt"},"parameters":{"sid":"Sorghum","header":0}},{"id":1,"appId":"MergeG2P-0.0.2","jobId":"7083916814911532570-242ac115-0001-007","inputs":{"sid":"agave://data.sciapps.org/example_data/gwas_raw/myStudy_filt.c9.hmp.txt","trait":{"step":0,"output_name":"tnrs.txt"}},"parameters":{"headlines":1,"extracols":11}},{"id":2,"appId":"NPUTE-0.0.1","jobId":"7274773547954138650-242ac115-0001-007","inputs":{"i":{"step":1,"output_name":"m_marker.txt"}},"parameters":{"stepWindow":1,"endWindow":5,"mode":"Imputing","missing":"N","startWindow":2,"ploidy":"1","extracols":11,"header":1}},{"id":3,"appId":"NumericalTransform-TASSEL-4.3.15","jobId":"1863831980171062810-242ac115-0001-007","inputs":{"h":{"step":2,"output_name":"imputed.txt"}},"parameters":{"numericalGenoTransform":"collapse","markerformat":"Hapmap","minfreq":"0.05"}},{"id":4,"appId":"CloudSTRUCTURE-2.3.4","jobId":"6431174488491748890-242ac115-0001-007","inputs":{"i":{"step":3,"output_name":"nt.txt"}},"parameters":{"numinds":310,"phaseinfo":false,"burnin":1000,"mapdistances":false,"missing":"-9","numloci":12098,"popdata":false,"maxpops":3,"numreps":1000,"markernames":true,"popflag":false,"onerowperind":true,"phenotype":false,"ploidy":1,"label":true,"markovphase":false,"extracols":0}},{"id":5,"appId":"MLM-TASSEL-5.1.23","jobId":"3893938504683950566-242ac115-0001-007","inputs":{"rtrait":{"step":1,"output_name":"m_trait.txt"},"qstructure":{"step":4,"output_name":"s3_f"},"hmarker":{"step":2,"output_name":"imputed.txt"}},"parameters":{"level":1,"mlmVarCompEst":"P3D","filter":"0.05","markerformat":"Hapmap","maxp":1,"mlmCompressionLevel":"Optimum"}}]}
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agavedancer/public/assets/BEAST-2.1.3u1.json

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