installation error

[frankbioinfo]

Hello team,

Thanks for developing bxtools.

While installing i encounter this error.

thread_pool.c: In function ‘hts_tpool_init’:
thread_pool.c:676: warning: implicit declaration of function ‘pthread_mutexattr_settype’
thread_pool.c:676: error: ‘PTHREAD_MUTEX_RECURSIVE’ undeclared (first use in this function)
thread_pool.c:676: error: (Each undeclared identifier is reported only once
thread_pool.c:676: error: for each function it appears in.)
make[2]: *** [thread_pool.o] Error 1

Is it common?

Thanks.

Frank

[walaj]

Hi Frank,
Are you still having this issue? Are you able to compile htslib, aside from bxtools? That might give some clues. I haven't seen this issue before.
Jeremiah

[brainstorm]

Alternatively you can now install this package with Bioconda:

bioconda/bioconda-recipes#8205

[frankbioinfo]

Sorry all, i was able to install it using docker image, can i request if anyone from the team can build a docker image for this it will be very helpful just a thought.

Thanks for response.

Frank