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1. scTools-py scTools-py Public

   A collection of Python helper functions for scRNAseq data analysis.

   Python 1 2

2. scTools-bash scTools-bash Public

   Bash scripts for formatting FASTQ files

   Shell

3. WagnerLabUCSF/TracerSeq-py WagnerLabUCSF/TracerSeq-py Public

   Python module for processing and analyzing TracerSeq datasets

   Python

4. STITCH STITCH Public archive

   Assembles a graph manifold from time series single-cell RNAseq data

   MATLAB 16 3

5. Diaz2019 Diaz2019 Public archive

   Analysis of single-cell RNA seq data appearing in Diaz & Wagner et al (Nature 2020)

   Jupyter Notebook 3 1

6. TracerSeq TracerSeq Public archive

   Matlab code for processing inDrops TracerSeq FASTQ files and calculating state-lineage couplings

   MATLAB 1