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Commits on May 1, 2020

• remove artifact

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  56c9379

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• initial commit for calc_pmf_partition

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• add details

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• refine figures

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Commits on Apr 28, 2020

• combine upper/lower leaflet data due to system symmetry

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• add pka plot option

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• save unsymmetrized data

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Commits on Feb 25, 2020

• initial commit for count_lipid_leaflet

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• add error subsampling

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Commits on Jan 24, 2020

• add possible data type for plot as permeant orientation

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• save calculated data to output files

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• wrap around permeant to account for pbc at bulk water

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• differentiate plot and font sizes based on what_for

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  f88e209

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• minor changes

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Commits on Jan 23, 2020

• plot_correlation first commit

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• prune imports

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• plot and cosmetic polishes for area_box_lipid; also add examples

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• add readme files

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Commits on Jan 22, 2020

• ignore ipynb in computing language stats by github linguist

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• major reorganization of analysis script/examples

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  committed
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• tcl script to correlate z position with hbonds and orientation

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• minor details

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• see plot without symmetrization

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• simple symmetrization script

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• read multiple files in plot_permeate

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• read symmetrized file differently

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Commits on Jan 17, 2020

• add warning and archive symmetrize script

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Commits on Jan 16, 2020

• minor changes regarding plot labels and tcl script locations

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Commits on Nov 20, 2019

• append to output file

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• merge branch 'master' of github.com:vtlim/permeability

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• add missing script

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• updated input files

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• extract and concat frames with specified z-value

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Commits on Nov 19, 2019

• initial commit of vmd scripts

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Commits on Oct 24, 2019

• remove old abf_pmf_processor example

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