Movida instalación de DeepVATS del entrypoint a Dockerfile.jupyter

Para Debido a un error solucionar el error siguiente:

jupyter-1  | Obtaining file:///home/macu/work
jupyter-1  |   Preparing metadata (setup.py) ... done
jupyter-1  | Installing collected packages: dvats
jupyter-1  |   Running setup.py develop for dvats
jupyter-1  |     error: subprocess-exited-with-error
jupyter-1  |
jupyter-1  |     × python setup.py develop did not run successfully.
jupyter-1  |     │ exit code: 1
jupyter-1  |     ╰─> [32 lines of output]
jupyter-1  |         /home/macu/work/setup.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
jupyter-1  |           from pkg_resources import parse_version
jupyter-1  |         running develop
jupyter-1  |         /usr/local/share/miniconda3/envs/env/lib/python3.10/site-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated.
jupyter-1  |         !!
jupyter-1  |
jupyter-1  |                 ********************************************************************************
jupyter-1  |                 Please avoid running ``setup.py`` and ``easy_install``.
jupyter-1  |                 Instead, use pypa/build, pypa/installer or other
jupyter-1  |                 standards-based tools.
jupyter-1  |
jupyter-1  |                 See pypa/setuptools#917 for details.
jupyter-1  |                 ********************************************************************************
jupyter-1  |
jupyter-1  |         !!
jupyter-1  |           easy_install.initialize_options(self)
jupyter-1  |         /usr/local/share/miniconda3/envs/env/lib/python3.10/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
jupyter-1  |         !!
jupyter-1  |
jupyter-1  |                 ********************************************************************************
jupyter-1  |                 Please avoid running ``setup.py`` directly.
jupyter-1  |                 Instead, use pypa/build, pypa/installer or other
jupyter-1  |                 standards-based tools.
jupyter-1  |
jupyter-1  |                 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
jupyter-1  |                 ********************************************************************************
jupyter-1  |
jupyter-1  |         !!
jupyter-1  |           self.initialize_options()
jupyter-1  |         running egg_info
jupyter-1  |         creating dvats.egg-info
jupyter-1  |         error: could not create 'dvats.egg-info': Permission denied
jupyter-1  |         [end of output]
jupyter-1  |
jupyter-1  |     note: This error originates from a subprocess, and is likely not a problem with pip.
jupyter-1  | error: subprocess-exited-with-error
jupyter-1  |
jupyter-1  | × python setup.py develop did not run successfully.
jupyter-1  | │ exit code: 1
jupyter-1  | ╰─> [32 lines of output]
jupyter-1  |     /home/macu/work/setup.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
jupyter-1  |       from pkg_resources import parse_version
jupyter-1  |     running develop
jupyter-1  |     /usr/local/share/miniconda3/envs/env/lib/python3.10/site-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated.
jupyter-1  |     !!
jupyter-1  |
jupyter-1  |             ********************************************************************************
jupyter-1  |             Please avoid running ``setup.py`` and ``easy_install``.
jupyter-1  |             Instead, use pypa/build, pypa/installer or other
jupyter-1  |             standards-based tools.
jupyter-1  |
jupyter-1  |             See pypa/setuptools#917 for details.
jupyter-1  |             ********************************************************************************
jupyter-1  |
jupyter-1  |     !!
jupyter-1  |       easy_install.initialize_options(self)
jupyter-1  |     /usr/local/share/miniconda3/envs/env/lib/python3.10/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
jupyter-1  |     !!
jupyter-1  |
jupyter-1  |             ********************************************************************************
jupyter-1  |             Please avoid running ``setup.py`` directly.
jupyter-1  |             Instead, use pypa/build, pypa/installer or other
jupyter-1  |             standards-based tools.
jupyter-1  |
jupyter-1  |             See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
jupyter-1  |             ********************************************************************************
jupyter-1  |
jupyter-1  |     !!
jupyter-1  |       self.initialize_options()
jupyter-1  |     running egg_info
jupyter-1  |     creating dvats.egg-info
jupyter-1  |     error: could not create 'dvats.egg-info': Permission denied
jupyter-1  |     [end of output]
jupyter-1  |
jupyter-1  | note: This error originates from a subprocess, and is likely not a problem with pip.

Se mueve la instalación de DeepVATS (la carpeta work) de entrypoint.sh al final de Dockerfile.jupyter, copiando únicamente las carpetas y ficheros necesarios para la instalación.

docker/Dockerfile.jupyter

@@ -164,6 +164,20 @@ RUN pip install aeon
 #     && conda deactivate
 # # ---- Zero shot ---- #
 
+COPY --chown=$UID:$GID ./Makefile $HOME/work/
+COPY --chown=$UID:$GID ./nbs $HOME/work/
+COPY --chown=$UID:$GID ./settings.ini $HOME/work/
+COPY --chown=$UID:$GID ./dvats $HOME/work/
+COPY --chown=$UID:$GID ./LICENSE $HOME/work/
+COPY --chown=$UID:$GID ./MANIFEST.in $HOME/work/
+COPY --chown=$UID:$GID ./nbs_pipeline $HOME/work/
+COPY --chown=$UID:$GID ./setup.py $HOME/work/
+COPY --chown=$UID:$GID ./README.md $HOME/work/
+
+RUN cd $HOME/work  \
+    && pip install -e $HOME/work
+
+
 ARG JUPYTER_TOKEN
 ENV JUPYTER_TOKEN=${JUPYTER_TOKEN}
 

docker/entrypoint.sh

@@ -2,8 +2,8 @@
 set -e
 #echo $ENV_PREFIX
 #conda list 
-ls -la /home/$USER/work
-pip install -e /home/$USER/work
+#ls -la /home/$USER/work
+#pip install -e /home/$USER/work
 
 echo $WANDB_ENTITY $USER $WANDB_PROJECT