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Issues list

Jlibsedml and SedmlImporter should be upgraded to be able to read and approraitely handle v5 BioSimulators SED-ML Tech Debt
#1470 opened Apr 3, 2025 by CodeByDrescher
@CodeByDrescher
Update VCell to handle many-SubTasks in SedML's RepeatedTask BioSimulators java Pull requests that update Java code SED-ML Type: enhancement enhance existing feature
#1469 opened Apr 3, 2025 by CodeByDrescher
@CodeByDrescher
CLI Strict Mode toggle needs to be created Error Reporting All issues related to the relay of errors java Pull requests that update Java code SED-ML Tech Debt validation
#1428 opened Jan 27, 2025 by CodeByDrescher
@CodeByDrescher
Biomodels of the same publication should be packaged into a single sbml-omex BioSimulators java Pull requests that update Java code python Pull requests that update Python code SED-ML Type: enhancement enhance existing feature
#1343 opened Aug 29, 2024 by CodeByDrescher
VCell SEDML Export sometimes results in an "empty"/incomplete SEDML File java Pull requests that update Java code SED-ML Type: Bug bug report
#1237 opened May 1, 2024 by CodeByDrescher
@CodeByDrescher
Bug: RepeatedTasks with multiple ranges exported funny SED-ML Standards Type: Bug bug report validation
#1148 opened Feb 14, 2024 by CodeByDrescher
@CodeByDrescher
VCell Biosimulators CLI: stochastic simulation not working BioSimulators java Pull requests that update Java code Next Release SED-ML Type: Bug bug report VCell-7.5.1
#912 opened Jun 16, 2023 by leon9812
@CodeByDrescher
SEDML Exporter provides non-unique IDs java Pull requests that update Java code Next Release SED-ML To Refine issue is either too large in scope or undefined Type: Bug bug report
#891 opened May 19, 2023 by CodeByDrescher
1
SedML export gives bad XPATH java Pull requests that update Java code Next Release SED-ML Type: Bug bug report
#890 opened May 19, 2023 by CodeByDrescher
@CodeByDrescher
update importer and executor for VCML language format combine archives Next Release SED-ML Type: enhancement enhance existing feature validation VCell-7.5.0 Needed for Release 7.5
#719 opened Dec 23, 2022 by moraru
@moraru
Importer brings in unused models SED-ML Standards To Refine issue is either too large in scope or undefined validation VCell-7.6.0
#562 opened Nov 8, 2022 by moraru
1
@moraru
2
roundtrip fails due to math equivalency failure Next Release SBML SED-ML Standards Type: Bug bug report validation
#522 opened Oct 31, 2022 by moraru
@moraru
5
Round trip Disabled reactions to SBML (especially in SEDML context). SBML SED-ML Standards Type: enhancement enhance existing feature
#354 opened Sep 13, 2022 by jcschaff
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