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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "virtool-workflow"
version = "0.0.0"
description = "A framework for developing bioinformatics workflows for Virtool."
authors = [
"Ian Boyes",
"Blake Smith",
"Ryan Fang",
"Matt Curtis",
"Aman Monga",
"Bryce Davidson",
"Christine Wong Chong",
"Lilly Roberts",
"Markus Swoveland",
"Ryan Fang",
]
license = "MIT"
maintainers = [
"Ian Boyes",
"Reece Hoffman"
]
readme = "README.md"
repository = "https://github.com/virtool/virtool-workflow"
classifiers = [
"Programming Language :: Python :: 3.12",
]
packages = [
{ include = "virtool_workflow" },
]
[tool.poetry.dependencies]
python = "~3.12"
aiofiles = "^0.7.0"
aiohttp = "^3.8.1"
biopython = "^1.81"
click = "^8.1.7"
orjson = "^3.9.9"
pydantic-factories = "^1.17.3"
pyfixtures = "^1.0.0"
sentry-sdk = "^2.3.1"
virtool-core = "^14.0.0"
[tool.poetry.scripts]
run-workflow = "virtool_workflow.cli:cli_main"
[tool.poetry.group.dev.dependencies]
pytest = "^7.4.2"
pytest-aiohttp = "^1.0.0"
pytest-asyncio = "^0.21.0"
pytest-mock = "^3.10.0"
sphinx = "^4.0.2"
syrupy = "^3.0.5"
sphinx-autobuild = "^2021.3.14"
sphinx-nameko-theme = "^0.0.3"
pytest-structlog = "^0.6"
sphinx-toolbox = "^3.5.0"
ruff = "^0.4.6"
piccolo-theme = "^0.22.0"
[tool.pytest.ini_options]
asyncio_mode = "auto"
[tool.ruff]
exclude = [
"docs",
".eggs",
".git",
".github",
".mypy_cache",
".pytest-cache",
".ruff_cache",
"__pypackages__",
]
target-version = "py312"
[tool.ruff.lint]
ignore = [
"ANN101",
"D203",
"D213"
]
select = ["ALL"]
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"