You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardexpand all lines: docs/source/corrections.rst
+2-2
Original file line number
Diff line number
Diff line change
@@ -45,7 +45,7 @@ the normalization measurements that is smaller than the FOV, you can input its r
45
45
the attenuation coefficient of the material with ``options.normalization_attenuation``. You can also use automatic scatter correction with ``options.normalization_scatter_correction``. Note that Python does not (yet) support computing of
46
46
the normalization coefficients.
47
47
48
-
If you use normalization data NOT computed by OMEGA, you need to set ``options.use_user_normalization`` to true. To insert the attenuation data, either input the data into ``options.normalization`` or select it when running the code
48
+
If you use normalization data NOT computed by OMEGA, you need to set ``options.use_user_normalization`` to true. To insert the normalization coefficient data, either input the data into ``options.normalization`` or select it when running the code
49
49
and getting the prompt for the data. The normalization data has to be either nrm-file (Inveon normalization) or mat-file (has to be the only variable, or at least the first variable). Normalization data computed with OMEGA are saved
50
50
to the mat-files folder and loaded automatically if the same measurement dimensions and scanner are used.
51
51
@@ -75,7 +75,7 @@ regularization is generally only applied to the main FOV and third, you can sele
75
75
reconstruction, enabled with ``options.useMultiResolutionVolumes``. The extended volume is divided into separate volumes, where the amount depends on whether transaxial and/or axial directions are included. If both are included, there
76
76
will be 6 multi-resolution volumes plus the main volume. The multi-resolution volumes can have larger voxel size than the main volume. This can be controlled with ``options.multiResolutionScale``, where the default value of 1/4 means
77
77
that the original size is divided by this value, i.e. the resolution is 1/4 of the original and the voxel size four times larger. The default extended FOV extension length is 40% (0.4) of the original size per side. With 1/4 scale, this is
78
-
essentially reduced to 10%. You can adjust this manually with ``options.eFOVLength``. With multi-resolution volumes, the mask image and regularization are only used for the main volume!
78
+
essentially reduced to 10% increase in voxel count. You can adjust this manually with ``options.eFOVLength``. With multi-resolution volumes, the mask image and regularization are only used for the main volume!
79
79
80
80
See https://doi.org/10.1088/1361-6560/aa52b8 for details on the multi-resolution method. Note that the OMEGA implementation may not exactly match the paper.
0 commit comments