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Reference-based Ancestry INference

Lifecycle: experimental GitHub tag R build status

Installation

# Install rain from CRAN:
install.packages("rain")

# Or the the development version from GitHub:
# install.packages("remotes")
remotes::install_github("umr1283/rain")

Overview

  • estimate_ethnicity() allows to format VCF files and compute the genomic components (and some figures) for ethnicity using flashpca software
  • pca_report() allows to compute an analysis report using principal component analysis from flashpca software.

Getting help

If you encounter a clear bug, please file a minimal reproducible example on github.
For questions and other discussion, please contact the package maintainer.

Code of Conduct

Please note that the rain project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.