DESCRIPTION

Package: rain
Title: Reference-based Ancestry INference
Version: 0.7.1
Authors@R: 
    c(person(given = "Mickaël",
             family = "Canouil",
             role = c("aut", "cre"),
             email = "mickael@canouil.dev",
             comment = c(ORCID = "0000-0002-3396-4549")),
      person(given = "Mathilde",
             family = "Boissel",
             role = "aut",
             email = "mathilde.boissel@cnrs.fr",
             comment = c(ORCID = "0000-0001-5719-8749")))
Description: Compute ancestry inference (principal component analysis) of a set of individuals 
    using either array or sequencing data (i.e., plink or VCF format) 
    and a reference panel (e.g., 1,000 genomes project).
License: MIT + file LICENSE
URL: https://github.com/umr1283/rain/
BugReports: https://github.com/umr1283/rain/issues/
Depends: 
    R (>= 3.5.0)
Imports: 
    concaveman (>= 1.0.0),
    data.table (>= 1.13.2),
    flashpcaR (>= 2.1),
    fs (>= 1.5.0),
    ggforce (>= 0.3.2),
    ggplot2 (>= 3.3.2),
    ggtext (>= 0.1.0),
    grDevices,
    gt (>= 0.2.2),
    parallel,
    patchwork (>= 1.0.1),
    ragg (>= 1.0.0),
    stats,
    utils
Suggests:
    roxygen2 (>= 7.1.1)
Remotes: umr1283/flashpcaR
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
SystemRequirements: bcftools, vcftools, bgzip, tabix, plink1.9