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Makefile
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# Fuzzingbook/Debuggingbook Makefile
# Get chapter files
CHAPTERS_MAKEFILE = Chapters.makefile
include $(CHAPTERS_MAKEFILE)
# All source notebooks
SOURCE_FILES = \
$(FRONTMATTER) \
$(CHAPTERS) \
$(APPENDICES) \
$(EXTRAS)
# The bibliography file
BIB = fuzzingbook.bib
# The utilities folder
UTILS = bookutils
# The utilities in $(UTILS)
UTILITY_FILES = \
__init__.py \
PrettyTable.py \
README.md \
export_notebook_code.py \
import_notebooks.py \
set_fixed_seed.py
# Where the notebooks are
NOTEBOOKS = notebooks
# Derived versions including HTML, SVG, and text output cells (for Web)
FULL_NOTEBOOKS = full_notebooks
# Derived versions including PNG and text output cells,
# but without excursions (for LaTeX and PDF)
RENDERED_NOTEBOOKS = rendered
# Git repo
GITHUB_REPO = https://github.com/uds-se/$(PROJECT)/
BINDER_URL = https://mybinder.org/v2/gh/uds-se/$(PROJECT)/master?filepath=docs/beta/notebooks/00_Table_of_Contents.ipynb
# Sources in the notebooks folder
SOURCES = $(SOURCE_FILES:%=$(NOTEBOOKS)/%)
CHAPTER_SOURCES = $(CHAPTERS:%=$(NOTEBOOKS)/%)
PUBLIC_SOURCES = $(PUBLIC_CHAPTERS:%=$(NOTEBOOKS)/%)
READY_SOURCES = $(READY_CHAPTERS:%=$(NOTEBOOKS)/%)
TODO_SOURCES = $(TODO_CHAPTERS:%=$(NOTEBOOKS)/%)
NEW_SOURCES = $(NEW_CHAPTERS:%=$(NOTEBOOKS)/%)
APPENDICES_SOURCES = $(APPENDICES:%=$(NOTEBOOKS)/%)
# Where to place the pdf, html, slides
PDF_TARGET = pdf/
NBPDF_TARGET = nbpdf/
HTML_TARGET = html/
SLIDES_TARGET = slides/
CODE_TARGET = code/
MARKDOWN_TARGET = markdown/
WORD_TARGET = word/
EPUB_TARGET = epub/
DEPEND_TARGET = .depend/
DOCS_TARGET = docs/
# If BETA=y, we create files in the "beta" subdir. Use 'make docs-beta', 'make html-beta' to invoke
ifdef BETA
DOCS_TARGET := docs/beta/
HTML_TARGET := beta/$(HTML_TARGET)
SLIDES_TARGET := beta/$(SLIDES_TARGET)
CODE_TARGET := beta/$(CODE_TARGET)
BETA_FLAG = --include-ready --include-todo
endif
ifndef BETA
# Avoid warning: undefined variable `BETA_FLAG'
BETA_FLAG =
endif
# Files to appear in the table of contents
ifndef BETA
TOC_CHAPTERS := $(PUBLIC_CHAPTERS)
TOC_APPENDICES = $(APPENDICES)
CHAPTER_SOURCES := $(PUBLIC_CHAPTERS:%=$(NOTEBOOKS)/%)
endif
ifdef BETA
TOC_CHAPTERS := $(CHAPTERS)
TOC_APPENDICES = $(APPENDICES)
endif
# Files to appear on the Web page
DOCS = \
$(FRONTMATTER:%.ipynb=%) \
$(TOC_CHAPTERS:%.ipynb=%) \
$(APPENDICES:%.ipynb=%) \
$(EXTRAS:%.ipynb=%)
# Various derived files
TEXS = $(SOURCE_FILES:%.ipynb=$(PDF_TARGET)%.tex)
PDFS = $(SOURCE_FILES:%.ipynb=$(PDF_TARGET)%.pdf)
NBPDFS = $(SOURCE_FILES:%.ipynb=$(NBPDF_TARGET)%.pdf)
HTMLS = $(SOURCE_FILES:%.ipynb=$(HTML_TARGET)%.html)
SLIDES = $(SOURCE_FILES:%.ipynb=$(SLIDES_TARGET)%.slides.html)
PYS = $(SOURCE_FILES:%.ipynb=$(CODE_TARGET)%.py) \
$(CODE_TARGET)setup.py \
$(CODE_TARGET)__init__.py
WORDS = $(SOURCE_FILES:%.ipynb=$(WORD_TARGET)%.docx)
MARKDOWNS = $(SOURCE_FILES:%.ipynb=$(MARKDOWN_TARGET)%.md)
EPUBS = $(SOURCE_FILES:%.ipynb=$(EPUB_TARGET)%.epub)
FULLS = $(FULL_NOTEBOOKS)/$(UTILS) \
$(UTILITY_FILES:%=$(FULL_NOTEBOOKS)/$(UTILS)/%) \
$(SOURCE_FILES:%.ipynb=$(FULL_NOTEBOOKS)/%.ipynb)
RENDERS = $(SOURCE_FILES:%.ipynb=$(RENDERED_NOTEBOOKS)/%.ipynb)
DEPENDS = $(SOURCE_FILES:%.ipynb=$(DEPEND_TARGET)%.makefile)
CHAPTER_PYS = $(CHAPTERS:%.ipynb=$(CODE_TARGET)%.py)
PDF_FILES = $(SOURCE_FILES:%.ipynb=$(PDF_TARGET)%_files)
NBPDF_FILES = $(SOURCE_FILES:%.ipynb=$(NBPDF_TARGET)%_files)
HTML_FILES = $(SOURCE_FILES:%.ipynb=$(HTML_TARGET)%_files)
SLIDES_FILES = $(SOURCE_FILES:%.ipynb=$(SLIDES_TARGET)%_files)
SITEMAP_SVG = $(NOTEBOOKS)/PICS/Sitemap.svg
# Configuration
# The site
SITE = https://www.$(PROJECT).org
# What we use for production: nbpublish (preferred), bookbook, or nbconvert
PUBLISH ?= nbpublish
# What we use for LaTeX: latexmk (preferred), or pdflatex
LATEX ?= latexmk
## Tools
# Python
PYTHON ?= python3
# Jupyter
JUPYTER ?= jupyter
# The nbpublish tool (preferred; https://github.com/chrisjsewell/ipypublish)
# (see nbpublish -h for details)
NBPUBLISH ?= nbpublish
# The bookbook tool (okay for chapters and books; but no citations yet)
# https://github.com/takluyver/bookbook
BOOKBOOK_LATEX ?= $(PYTHON) -m bookbook.latex
BOOKBOOK_HTML ?= $(PYTHON) -m bookbook.html
# The nbconvert alternative (okay for chapters; doesn't work for book; no citations)
NBCONVERT ?= $(JUPYTER) nbconvert
# Notebook merger
NBMERGE = $(PYTHON) utils/nbmerge.py
# LaTeX
PDFLATEX ?= pdflatex
XELATEX ?= xelatex
BIBTEX ?= bibtex
LATEXMK ?= latexmk
LATEXMK_OPTS ?= -xelatex -quiet -f -interaction=nonstopmode
# Word
PANDOC ?= pandoc
# Markdown (see https://github.com/aaren/notedown)
NOTEDOWN ?= notedown
# Style checks
PYCODESTYLE ?= pycodestyle
PYCODESTYLE_CFG = code/pycodestyle.cfg
AUTOPEP8 ?= autopep8
AUTOPEP8_CFG = code/autopep8.cfg
AUTOPEP8_OPTIONS = --global-config $(AUTOPEP8_CFG) --aggressive --in-place
NBAUTOPEP8 = $(PYTHON) utils/nbautopep8.py
# Program to open files after creating, say OPEN=open (default: ignore; "true" does nothing)
OPEN ?= true
# Make directory
MKDIR = mkdir -p
ifndef PUBLISH
# Determine publishing program
OUT := $(shell which $(NBPUBLISH) > /dev/null && echo yes)
ifeq ($(OUT),yes)
# We have nbpublish
PUBLISH = nbpublish
else
# Issue a warning message
OUT := $(shell $(NBPUBLISH) -h > /dev/null)
# We have nbconvert
PUBLISH = nbconvert
PUBLISH_PLUGINS =
endif
endif
ifndef LATEX
# Determine publishing program
OUT := $(shell which $(LATEXMK) > /dev/null && echo yes)
ifeq ($(OUT),yes)
# We have latexmk
LATEX = $(LATEXMK)
else
# Issue a warning message
OUT := $(shell $(LATEXMK) -h > /dev/null)
# We have pdflatex
LATEX = $(PDFLATEX)
endif
endif
# Book base name
BOOK = $(PROJECT)
ifeq ($(PUBLISH),bookbook)
# Use bookbook
CONVERT_TO_HTML = $(NBCONVERT) --to html --output-dir=$(HTML_TARGET)
CONVERT_TO_TEX = $(NBCONVERT) --to latex --template $(PROJECT).tplx --output-dir=$(PDF_TARGET)
BOOK_TEX = $(PDF_TARGET)$(BOOK).tex
BOOK_PDF = $(PDF_TARGET)$(BOOK).pdf
BOOK_HTML = $(HTML_TARGET)$(BOOK).html
BOOK_HTML_FILES = $(HTML_TARGET)$(BOOK)_files
BOOK_PDF_FILES = $(PDF_TARGET)$(BOOK)_files
PUBLISH_PLUGINS =
else
ifeq ($(PUBLISH),nbpublish)
# Use nbpublish
CONVERT_TO_HTML = $(NBPUBLISH) -f html_ipypublish_chapter --outpath $(HTML_TARGET)
CONVERT_TO_TEX = $(NBPUBLISH) -f latex_ipypublish_chapter --outpath $(PDF_TARGET)
# CONVERT_TO_SLIDES = $(NBPUBLISH) -f slides_ipypublish_all --outpath $(SLIDES_TARGET)
BOOK_TEX = $(PDF_TARGET)$(BOOK).tex
BOOK_PDF = $(PDF_TARGET)$(BOOK).pdf
BOOK_HTML = $(HTML_TARGET)$(BOOK).html
BOOK_HTML_FILES = $(HTML_TARGET)$(BOOK)_files
BOOK_PDF_FILES = $(PDF_TARGET)$(BOOK)_files
PUBLISH_PLUGINS = \
ipypublish_plugins/html_ipypublish_chapter.py \
ipypublish_plugins/latex_ipypublish_book.py \
ipypublish_plugins/latex_ipypublish_chapter.py
else
# Use standard Jupyter tools
CONVERT_TO_HTML = $(NBCONVERT) --to html --output-dir=$(HTML_TARGET)
CONVERT_TO_TEX = $(NBCONVERT) --to latex --template $(PROJECT).tplx --output-dir=$(PDF_TARGET)
# CONVERT_TO_SLIDES = $(NBCONVERT) --to slides --output-dir=$(SLIDES_TARGET)
BOOK_TEX =
BOOK_PDF =
BOOK_HTML =
BOOK_HTML_FILES =
BOOK_PDF_FILES =
PUBLISH_PLUGINS =
endif
endif
# For Python, we use our own script that takes care of distinguishing
# main (script) code from definitions to be imported
EXPORT_NOTEBOOK_CODE = $(NOTEBOOKS)/$(UTILS)/export_notebook_code.py
CONVERT_TO_PYTHON = $(PYTHON) $(EXPORT_NOTEBOOK_CODE)
# This would be the Jupyter alternative
# CONVERT_TO_PYTHON = $(NBCONVERT) --to python --output-dir=$(CODE_TARGET)
# For slides, we use the standard Jupyter tools
# Main reason: Jupyter has a neat interface to control slides/sub-slides/etc
CONVERT_TO_SLIDES = $(NBCONVERT) --to slides --output-dir=$(SLIDES_TARGET)
REVEAL_JS = $(SLIDES_TARGET)reveal.js
# For Word .docx files, we start from the HTML version
CONVERT_TO_WORD = $(PANDOC)
# For Markdown .md files, we use markdown
# Note: adding --run re-executes all code
# CONVERT_TO_MARKDOWN = $(NOTEDOWN) --to markdown
CONVERT_TO_MARKDOWN = $(NBCONVERT) --to markdown --output-dir=$(MARKDOWN_TARGET)
# Run
# WhenToStopFuzzing needs about 120 seconds to render
EXECUTE_TIMEOUT = 140
EXECUTE_OPTIONS = --ExecutePreprocessor.timeout=$(EXECUTE_TIMEOUT)
EXECUTE_NOTEBOOK = $(NBCONVERT) $(EXECUTE_OPTIONS) --to notebook --execute --output-dir=$(FULL_NOTEBOOKS)
# Render
RENDER_NOTEBOOK = RENDER_HTML=1 $(NBCONVERT) $(EXECUTE_OPTIONS) --to notebook --execute --output-dir=$(RENDERED_NOTEBOOKS)
# Zip
ZIP ?= zip
ZIP_OPTIONS = -r
# Short targets
# Default target is "chapters", as that's what you'd typically like to recreate after a change
.PHONY: chapters default
chapters default: html code
# The book is recreated after any change to any source
.PHONY: book all and more
book $(PROJECT): book-html book-pdf
all: chapters pdf code slides book
and more: word markdown epub
# Individual targets
.PHONY: html pdf python code slides word doc docx md markdown epub
.PHONY: full-notebooks full fulls rendered-notebooks rendered renders book-pdf book-html
html: ipypublish-chapters $(HTMLS)
pdf: ipypublish-chapters $(PDFS)
nbpdf: ipypublish-chapters $(NBPDFS)
python code: $(PYS)
slides: $(SLIDES) $(REVEAL_JS)
word doc docx: $(WORDS)
md markdown: $(MARKDOWNS)
epub: $(EPUBS)
full-notebooks full fulls: $(FULLS)
rendered-notebooks rendered renders: $(RENDERS)
book-pdf $(PROJECT)-pdf: ipypublish-book $(BOOK_PDF)
book-html $(PROJECT)-html: ipypublish-book $(BOOK_HTML)
.PHONY: ipypublish-book ipypublish-chapters
ifeq ($(PUBLISH),bookbook)
ipypublish-book:
ipypublish-chapters:
else
ifeq ($(PUBLISH),nbpublish)
ipypublish-book:
ipypublish-chapters:
else
ipypublish-book:
@echo "To create the book, you need the 'nbpublish' program."
@echo "This is part of the 'ipypublish' package"
@echo "at https://github.com/chrisjsewell/ipypublish"
ipypublish-chapters:
@echo "Warning: Using '$(NBCONVERT)' instead of '$(NBPUBLISH)'"
@echo "Documents will be created without citations and references"
@echo "Install the 'ipypublish' package"
@echo "from https://github.com/chrisjsewell/ipypublish"
endif
endif
.PHONY: edit jupyter lab notebook
# Invoke notebook and editor: `make jupyter lab`
edit notebook:
$(JUPYTER) notebook
lab:
$(JUPYTER) lab
jupyter:
# Help
.PHONY: help
help:
@echo "Welcome to the '$(PROJECT)' Makefile!"
@echo ""
@echo "* make chapters (default) -> HTML and code for all chapters (notebooks)"
@echo "* make (pdf|html|code|slides|word|markdown) -> given subcategory only"
@echo "* make book -> entire book in PDF and HTML"
@echo "* make all -> all inputs in all output formats"
@echo "* make reformat -> reformat notebook Python code according to PEP8 guidelines"
@echo "* make style -> style checker"
@echo "* make crossref -> cross reference checker"
@echo "* make stats -> report statistics"
@echo "* make clean -> delete all derived files"
@echo ""
@echo "Created files end here:"
@echo "* PDFs -> '$(PDF_TARGET)', HTML -> '$(HTML_TARGET)', Python code -> '$(CODE_TARGET)', Slides -> '$(SLIDES_TARGET)'"
@echo "* Web site files -> '$(DOCS_TARGET)'"
@echo ""
@echo "Publish:"
@echo "* make docs -> Create public version of current documents"
@echo "* make beta -> Create beta version of current documents"
@echo "* make publish-all -> Add docs to git, preparing for publication"
@echo ""
@echo "Settings:"
@echo "* Use make PUBLISH=(nbconvert|nbpublish|bookbook) to choose a converter"
@echo " (default: automatic)"
# Run a notebook, (re)creating all output cells
ADD_METADATA = utils/add_metadata.py
NBAUTOSLIDE = utils/nbautoslide.py
NBSYNOPSIS = utils/nbsynopsis.py
NBSHORTEN = utils/nbshorten.py
$(FULL_NOTEBOOKS)/%.ipynb: $(NOTEBOOKS)/%.ipynb $(DEPEND_TARGET)%.makefile $(ADD_METADATA) $(NBAUTOSLIDE) $(NBSYNOPSIS)
$(EXECUTE_NOTEBOOK) $<
$(PYTHON) $(ADD_METADATA) $@ > $@~ && mv $@~ $@
$(PYTHON) $(NBAUTOSLIDE) --in-place $@
$(PYTHON) $(NBSYNOPSIS) --project $(PROJECT) --update $@
$(RENDERED_NOTEBOOKS)/%.ipynb: $(NOTEBOOKS)/%.ipynb $(DEPEND_TARGET)%.makefile $(ADD_METADATA) $(NBAUTOSLIDE) $(NBSYNOPSIS) $(NBSHORTEN) $(NOTEBOOKS)/$(UTILS)/__init__.py
$(RENDER_NOTEBOOK) $<
$(PYTHON) $(ADD_METADATA) $@ > $@~ && mv $@~ $@
$(PYTHON) $(NBAUTOSLIDE) --in-place $@
RENDER_HTML=1 $(PYTHON) $(NBSYNOPSIS) --project $(PROJECT) --update $@
$(PYTHON) $(NBSHORTEN) --link-to "$(SITE)/html/" --in-place $@
$(FULL_NOTEBOOKS)/$(UTILS):
$(MKDIR) $(FULL_NOTEBOOKS)/$(UTILS)
$(FULL_NOTEBOOKS)/$(UTILS)/%: $(NOTEBOOKS)/$(UTILS)/%
@test -d $(FULL_NOTEBOOKS)/$(UTILS) || \
$(MKDIR) $(FULL_NOTEBOOKS)/$(UTILS)
cp -pr $< $@
# Conversion rules - chapters
ifeq ($(LATEX),pdflatex)
# Use PDFLaTeX
$(PDF_TARGET)%.pdf: $(PDF_TARGET)%.tex $(BIB)
@echo Running LaTeX...
@-test -L $(PDF_TARGET)PICS || ln -s ../$(NOTEBOOKS)/PICS $(PDF_TARGET)
cd $(PDF_TARGET) && $(PDFLATEX) $*
-cd $(PDF_TARGET) && $(BIBTEX) $*
cd $(PDF_TARGET) && $(PDFLATEX) $*
cd $(PDF_TARGET) && $(PDFLATEX) $*
@cd $(PDF_TARGET) && $(RM) $*.aux $*.bbl $*.blg $*.log $*.out $*.toc $*.frm $*.lof $*.lot $*.fls
@cd $(PDF_TARGET) && $(RM) -r $*_files
@echo Created $@
@$(OPEN) $@
else
# Use LaTeXMK
$(PDF_TARGET)%.pdf: $(PDF_TARGET)%.tex $(BIB)
@echo Running LaTeXMK...
@-test -L $(PDF_TARGET)PICS || ln -s ../$(NOTEBOOKS)/PICS $(PDF_TARGET)
cd $(PDF_TARGET) && $(LATEXMK) $(LATEXMK_OPTS) $*
@cd $(PDF_TARGET) && $(RM) $*.aux $*.bbl $*.blg $*.log $*.out $*.toc $*.frm $*.lof $*.lot $*.fls $*.fdb_latexmk $*.xdv
@echo Created $@
@$(OPEN) $@
endif
# Keep the .tex files
.PRECIOUS: $(PDF_TARGET)%.tex
POST_TEX = utils/post_tex
$(PDF_TARGET)%.tex: $(RENDERED_NOTEBOOKS)/%.ipynb $(BIB) $(PUBLISH_PLUGINS) $(ADD_METADATA) $(POST_TEX)
$(eval TMPDIR := $(shell mktemp -d))
$(PYTHON) $(ADD_METADATA) --titlepage $< > $(TMPDIR)/$(notdir $<)
cp -pr $(NOTEBOOKS)/PICS $(BIB) $(TMPDIR)
$(CONVERT_TO_TEX) $(TMPDIR)/$(notdir $<)
$(POST_TEX) $@ > $@~ && mv $@~ $@
@-$(RM) -fr $(TMPDIR)
@cd $(PDF_TARGET) && $(RM) $*.nbpub.log
POST_HTML_OPTIONS = $(BETA_FLAG) \
--project="$(PROJECT)" \
--public-chapters="$(CHAPTER_SOURCES) $(APPENDICES_SOURCES)" \
--ready-chapters="$(READY_SOURCES)" \
--todo-chapters="$(TODO_SOURCES)" \
--new-chapters="$(NEW_SOURCES)" \
HTML_DEPS = $(BIB) $(PUBLISH_PLUGINS) utils/post_html.py $(CHAPTERS_MAKEFILE)
# index.html comes with relative links (html/) such that the beta version gets the beta menu
$(DOCS_TARGET)index.html: \
$(FULL_NOTEBOOKS)/index.ipynb $(HTML_DEPS)
@test -d $(DOCS_TARGET) || $(MKDIR) $(DOCS_TARGET)
@test -d $(HTML_TARGET) || $(MKDIR) $(HTML_TARGET)
$(CONVERT_TO_HTML) $<
mv $(HTML_TARGET)index.html $@
@cd $(HTML_TARGET) && $(RM) -r index.nbpub.log index_files
$(PYTHON) utils/post_html.py --menu-prefix=html/ --home $(POST_HTML_OPTIONS)$(HOME_POST_HTML_OPTIONS) $@
@$(OPEN) $@
# 404.html comes with absolute links (/html/) such that it works anywhare
# https://help.github.com/articles/creating-a-custom-404-page-for-your-github-pages-site/
$(DOCS_TARGET)404.html: $(FULL_NOTEBOOKS)/404.ipynb $(HTML_DEPS)
@test -d $(DOCS_TARGET) || $(MKDIR) $(DOCS_TARGET)
@test -d $(HTML_TARGET) || $(MKDIR) $(HTML_TARGET)
$(CONVERT_TO_HTML) $<
mv $(HTML_TARGET)404.html $@
@cd $(HTML_TARGET) && $(RM) -r 404.nbpub.log 404_files
$(PYTHON) utils/post_html.py --menu-prefix=/html/ --home $(POST_HTML_OPTIONS) $@
(echo '---'; echo 'permalink: /404.html'; echo '---'; cat $@) > $@~ && mv $@~ $@
@$(OPEN) $@
$(DOCS_TARGET)html/00_Index.html: $(DOCS_TARGET)notebooks/00_Index.ipynb $(HTML_DEPS)
$(CONVERT_TO_HTML) $<
@cd $(HTML_TARGET) && $(RM) -r 00_Index.nbpub.log 00_Index_files
@cd $(DOCS_TARGET)html && $(RM) -r 00_Index.nbpub.log 00_Index_files
mv $(HTML_TARGET)00_Index.html $@
$(PYTHON) utils/post_html.py $(POST_HTML_OPTIONS) $@
$(DOCS_TARGET)html/00_Table_of_Contents.html: $(DOCS_TARGET)notebooks/00_Table_of_Contents.ipynb $(SITEMAP_SVG)
$(CONVERT_TO_HTML) $<
@cd $(HTML_TARGET) && $(RM) -r 00_Table_of_Contents.nbpub.log 00_Table_of_Contents_files
@cd $(DOCS_TARGET)html && $(RM) -r 00_Table_of_Contents.nbpub.log 00_Table_of_Contents_files
mv $(HTML_TARGET)00_Table_of_Contents.html $@
$(PYTHON) utils/post_html.py $(POST_HTML_OPTIONS) $@
@$(OPEN) $@
$(HTML_TARGET)%.html: $(FULL_NOTEBOOKS)/%.ipynb $(HTML_DEPS)
@test -d $(HTML_TARGET) || $(MKDIR) $(HTML_TARGET)
$(CONVERT_TO_HTML) $<
@cd $(HTML_TARGET) && $(RM) $*.nbpub.log $*_files/$(BIB)
$(PYTHON) utils/post_html.py $(POST_HTML_OPTIONS) $@
@-test -L $(HTML_TARGET)PICS || ln -s ../$(NOTEBOOKS)/PICS $(HTML_TARGET)
@$(OPEN) $@
$(SLIDES_TARGET)%.slides.html: $(FULL_NOTEBOOKS)/%.ipynb $(BIB) $(NBSHORTEN)
@test -d $(SLIDES_TARGET) || $(MKDIR) $(SLIDES_TARGET)
$(eval TMPDIR := $(shell mktemp -d))
sed 's/\.ipynb)/\.slides\.html)/g' $< > $(TMPDIR)/$(notdir $<)
$(PYTHON) $(NBSHORTEN) --skip-slides --in-place $(TMPDIR)/$(notdir $<)
$(CONVERT_TO_SLIDES) $(TMPDIR)/$(notdir $<)
@cd $(SLIDES_TARGET) && $(RM) $*.nbpub.log $*_files/$(BIB)
@-test -L $(HTML_TARGET)PICS || ln -s ../$(NOTEBOOKS)/PICS $(HTML_TARGET)
@-$(RM) -fr $(TMPDIR)
@$(OPEN) $@
# Rules for beta targets
.FORCE:
ifndef BETA
beta/%: .FORCE
$(MAKE) BETA=beta $(@:beta/=)
$(DOCS_TARGET)beta/%: .FORCE
$(MAKE) BETA=beta $(@:beta/=)
%-beta: .FORCE
$(MAKE) BETA=beta $(@:-beta=)
%-all: % %-beta
@true
.PHONY: beta
beta: docs-beta
endif
# Reconstructing the reveal.js dir
$(REVEAL_JS):
git submodule update --init
$(CODE_TARGET)setup.py: $(CODE_TARGET)setup.py.in
cat $< > $@
chmod +x $@
$(CODE_TARGET)__init__.py: $(CODE_TARGET)__init__.py.in
cat $< > $@
chmod +x $@
# For code, we comment out fuzzingbook/debuggingbook imports,
# ensuring we import a .py and not the .ipynb file
$(CODE_TARGET)%.py: $(NOTEBOOKS)/%.ipynb $(EXPORT_NOTEBOOK_CODE)
@test -d $(CODE_TARGET) || $(MKDIR) $(CODE_TARGET)
$(CONVERT_TO_PYTHON) $< > $@~ && mv $@~ $@
# $(AUTOPEP8) $(AUTOPEP8_OPTIONS) $@
-chmod +x $@
# Markdown
$(MARKDOWN_TARGET)%.md: $(RENDERED_NOTEBOOKS)/%.ipynb $(BIB)
$(RM) -r $(MARKDOWN_TARGET)$(basename $(notdir $<)).md $(MARKDOWN_TARGET)$(basename $(notdir $<))_files
$(CONVERT_TO_MARKDOWN) $<
# For word, we convert from the HTML file
$(WORD_TARGET)%.docx: $(HTML_TARGET)%.html $(WORD_TARGET)pandoc.css
$(PANDOC) --css=$(WORD_TARGET)pandoc.css $< -o $@
# Epub comes from the markdown file
$(EPUB_TARGET)%.epub: $(MARKDOWN_TARGET)%.md
cd $(MARKDOWN_TARGET); $(PANDOC) -o ../$@ ../$<
# NBPDF files - generated from HMTL, with embedded notebooks
# See instructions at https://github.com/betatim/notebook-as-pdf
HTMLTONBPDF = utils/htmltonbpdf.py
$(NBPDF_TARGET)%.pdf: $(HTML_TARGET)/%.html $(RENDERED_NOTEBOOKS)/%.ipynb $(HTMLTONBPDF) $(HTML_TARGET)custom.css
@test -d $(NBPDF_TARGET) || $(MKDIR) $(NBPDF_TARGET)
$(PYTHON) $(HTMLTONBPDF) --attach --fix-html-links $${PWD}/$(HTML_TARGET)$(basename $(notdir $<)).html $(RENDERED_NOTEBOOKS)/$(basename $(notdir $<)).ipynb $@
sed "s!$(HTML_TARGET)!$(NBPDF_TARGET)!g" $@ > $@~ && mv $@~ $@
# Conversion rules - entire book
# We create a fuzzingbook/ or debuggingbook/ folder
# with the chapters ordered by number,
# and let the fuzzingbook converters run on this
ifeq ($(PUBLISH),nbpublish)
# With nbpublish
$(PDF_TARGET)$(BOOK).tex: $(RENDERS) $(BIB) $(PUBLISH_PLUGINS) $(CHAPTERS_MAKEFILE)
-$(RM) -r $(BOOK)
$(MKDIR) $(BOOK)
chapter=0; \
for file in $(SOURCE_FILES); do \
chnum=$$(printf "%02d" $$chapter); \
ln -s ../$(RENDERED_NOTEBOOKS)/$$file $(BOOK)/$$(echo $$file | sed 's/.*/Ch'$${chnum}'_&/g'); \
chapter=$$(expr $$chapter + 1); \
done
ln -s ../$(BIB) $(BOOK)
$(NBPUBLISH) -f latex_ipypublish_book --outpath $(PDF_TARGET) $(BOOK)
$(POST_TEX) $@ > $@~ && mv $@~ $@
$(RM) -r $(BOOK)
cd $(PDF_TARGET) && $(RM) $(BOOK).nbpub.log
@echo Created $@
$(HTML_TARGET)$(BOOK).html: $(FULLS) $(BIB) utils/post_html.py
-$(RM) -r $(BOOK)
$(MKDIR) $(BOOK)
chapter=0; \
for file in $(SOURCE_FILES); do \
chnum=$$(printf "%02d" $$chapter); \
ln -s ../$(FULL_NOTEBOOKS)/$$file $(BOOK)/$$(echo $$file | sed 's/.*/Ch'$${chnum}'_&/g'); \
chapter=$$(expr $$chapter + 1); \
done
ln -s ../$(BIB) $(BOOK)
$(CONVERT_TO_HTML) $(BOOK)
$(PYTHON) utils/nbmerge.py $(BOOK)/Ch*.ipynb > notebooks/$(BOOK).ipynb
$(PYTHON) utils/post_html.py $(BETA_FLAG) $(POST_HTML_OPTIONS) $@
$(RM) -r $(BOOK) notebooks/$(BOOK).ipynb
cd $(HTML_TARGET) && $(RM) $(BOOK).nbpub.log $(BOOK)_files/$(BIB)
@echo Created $@
else
# With bookbook
$(PDF_TARGET)$(BOOK).tex: $(RENDERS) $(BIB) $(PUBLISH_PLUGINS) $(CHAPTERS_MAKEFILE)
-$(RM) -r $(BOOK)
$(MKDIR) $(BOOK)
chapter=0; \
for file in $(SOURCE_FILES); do \
chnum=$$(printf "%02d" $$chapter); \
ln -s ../$(RENDERED_NOTEBOOKS)/$$file book/$$(echo $$file | sed 's/.*/'$${chnum}'-&/g'); \
chapter=$$(expr $$chapter + 1); \
done
cd book; $(BOOKBOOK_LATEX)
mv book/combined.tex $@
$(POST_TEX) $@ > $@~ && mv $@~ $@
$(RM) -r book
@echo Created $@
$(HTML_TARGET)book.html: $(FULLS) $(BIB) $(PUBLISH_PLUGINS)
-$(RM) -r book
$(MKDIR) book
for file in $(SOURCE_FILES); do \
ln -s ../$(FULL_NOTEBOOKS)/$$file book/$$(echo $$file | sed 's/[^-0-9]*\([-0-9][0-9]*\)_\(.*\)/\1-\2/g'); \
done
cd book; $(BOOKBOOK_HTML)
mv book/html/index.html $@
mv book/html/*.html $(HTML_TARGET)
$(RM) -r book
@echo Created $@
endif
## Some checks
# Style checks
.PHONY: style check-style checkstyle
style check-style checkstyle: $(PYS) $(PYCODESTYLE_CFG)
$(PYCODESTYLE) --config $(PYCODESTYLE_CFG) $(PYS)
@echo "All style checks passed."
# Automatic formatting
.PHONY: autopep8 reformat
autopep8 reformat: $(PYCODESTYLE_CFG)
$(NBAUTOPEP8) --split-cells --jobs -1 $(AUTOPEP8_OPTIONS) $(SOURCES)
@echo "Code reformatting complete. Use 'make full' to re-execute and test notebooks."
# List of Cross References
.PHONY: check-crossref crossref xref
check-crossref crossref xref: $(SOURCES)
@echo "Referenced notebooks (* = missing)"
@files=$$(grep '\.ipynb)' $(SOURCES) | sed 's/.*[(]\([a-zA-Z0-9_][a-zA-Z0-9_-]*\.ipynb\)[)].*/\1/' | grep -v http | sort | uniq); \
for file in $$files; do \
if [ -f $(NOTEBOOKS)/$$file ]; then \
echo ' ' $$file; \
else \
echo '* ' $$file "- in" $$(cd $(NOTEBOOKS); grep -l $$file $(SOURCE_FILES)); \
fi \
done
# Stats
.PHONY: stats
stats: $(SOURCES)
@cd $(NOTEBOOKS); ../utils/nbstats.py $(SOURCE_FILES)
# Run all code. This should produce no failures.
PY_SUCCESS_MAGIC = "--- Code check passed ---"
PYS_OUT = $(SOURCE_FILES:%.ipynb=$(CODE_TARGET)%.py.out)
# PYS_OUT = $(PUBLIC_SOURCES:%.ipynb=$(CODE_TARGET)%.py.out)
$(CODE_TARGET)%.py.out: $(CODE_TARGET)%.py
@echo Running $<...
@if $(PYTHON) $< > $@ 2>&1; then \
echo $(PY_SUCCESS_MAGIC) >> $@; \
exit 0; \
else \
echo "Error while running $<" >> $@; \
tail $@; \
touch -r $< $@; \
touch -A -010000 $@; \
exit 1; \
fi
.PHONY: check-code
check-code: code $(PYS_OUT)
@files_with_errors=$$(grep --files-without-match -- $(PY_SUCCESS_MAGIC) $(PYS_OUT)); \
if [ -z "$$files_with_errors" ]; then \
echo "All code checks passed."; \
else \
echo "Check these files for errors: $$files_with_errors"; \
exit 1; \
fi
# Import all code. This should produce no output (or error messages).
IMPORTS = $(subst .ipynb,,$(CHAPTERS) $(APPENDICES))
.PHONY: check-import check-imports
check-import check-imports: code
@echo "#!/usr/bin/env $(PYTHON)" > $(CODE_TARGET)import_all.py
@(for file in $(IMPORTS); do echo import $$file; done) | grep -v '^import [0-9][0-9]' >> $(CODE_TARGET)import_all.py
cd $(CODE_TARGET); $(PYTHON) import_all.py 2>&1 | tee import_all.py.out
@test ! -s $(CODE_TARGET)import_all.py.out && echo "All import checks passed."
@$(RM) $(CODE_TARGET)import_all.py*
# Same as above, but using Python standard packages only; import should work too
check-standard-imports: code
PYTHONPATH= $(MAKE) check-imports
check-package check-packages: code
@echo "#!/usr/bin/env $(PYTHON)" > import_packages.py
@(for file in $(IMPORTS); do echo import code.$$file; done) | grep -v '^import code.[0-9][0-9]' >> import_packages.py
$(PYTHON) import_packages.py 2>&1 | tee import_packages.py.out
@test ! -s import_packages.py.out && echo "Package check passed."
@$(RM) import_packages.py*
.PHONY: run
run: check-imports check-standard-imports check-package check-code
# Todo checks
check-todo todo:
@grep '\\todo' $(PUBLIC_SOURCES) $(READY_SOURCES); \
if [ $$? = 0 ]; then exit 1; else \
echo "No todos in $(PUBLIC_CHAPTERS:%.ipynb=%) $(READY_CHAPTERS:%.ipynb=%)"; exit 0; fi
# Spell checks
NBSPELLCHECK = utils/nbspellcheck.py
.PHONY: spell spellcheck check-spell
spell spellcheck check-spell:
$(NBSPELLCHECK) $(SOURCES)
# All checks
.PHONY: check check-all
check check-all: check-import check-package check-code check-style check-crossref check-todo
# Add notebook metadata (add table of contents, bib reference, etc.)
.PHONY: metadata
metadata: $(ADD_METADATA)
@for notebook in $(SOURCES); do \
echo "Adding metadata to $$notebook...\c"; \
$(PYTHON) $(ADD_METADATA) $$notebook > $$notebook~ || exit 1; \
if diff $$notebook $$notebook~; then \
echo "unchanged."; \
else \
mv $$notebook~ $$notebook; \
echo "done."; \
fi; \
$(RM) $$notebook~; \
done
## Publishing
.PHONY: docs
docs: publish-notebooks publish-index publish-html publish-code publish-dist \
publish-slides publish-pics \
$(DOCS_TARGET)index.html $(DOCS_TARGET)404.html README.md binder/postBuild
@echo "Now use 'make publish-all' to commit changes to docs."
# github does not like script tags;
# links to notebooks need to get adapted
README.md: $(MARKDOWN_TARGET)index.md Makefile
sed 's!<script.*</script>!!g' $< | \
sed 's!(\([_a-zA-Z0-9]*\).ipynb)!($(SITE)/html/\1.html)!g'> $@
.PHONY: publish
publish: run docs
git add $(DOCS_TARGET)* binder/postBuild README.md
-git status
-git commit -m "Doc update" $(DOCS_TARGET) binder README.md
@echo "Now use 'make push' to place docs on website and trigger a mybinder update"
# Add/update HTML code in Web pages
.PHONY: publish-html publish-html-setup
publish-html: html publish-html-setup \
$(DOCS_TARGET)html/00_Index.html \
$(DOCS_TARGET)html/00_Table_of_Contents.html \
$(DOCS_TARGET)html/custom.css \
$(DOCS_TARGET)html/favicon \
$(DOCS:%=$(DOCS_TARGET)html/%.html) \
$(DOCS:%=$(DOCS_TARGET)html/%_files)
publish-html-setup:
@test -d $(DOCS_TARGET) || $(MKDIR) $(DOCS_TARGET)
@test -d $(DOCS_TARGET)html || $(MKDIR) $(DOCS_TARGET)html
$(DOCS_TARGET)html/%: $(HTML_TARGET)%
cp -pr $< $@
# Add/update Python code on Web pages
.PHONY: publish-code publish-code-setup
publish-code: code publish-code-setup \
$(DOCS_TARGET)code/LICENSE.md \
$(DOCS_TARGET)code/README.md \
$(DOCS_TARGET)code/setup.py \
$(DOCS_TARGET)code/__init__.py \
$(UTILITY_FILES:%=$(DOCS_TARGET)code/$(UTILS)/%) \
$(PUBLIC_CHAPTERS:%.ipynb=$(DOCS_TARGET)code/%.py) \
$(APPENDICES:%.ipynb=$(DOCS_TARGET)code/%.py)
publish-code-setup:
@test -d $(DOCS_TARGET) \
|| $(MKDIR) $(DOCS_TARGET)
@test -d $(DOCS_TARGET)code \
|| $(MKDIR) $(DOCS_TARGET)code
@test -d $(DOCS_TARGET)code/$(UTILS) \
|| $(MKDIR) $(DOCS_TARGET)code/$(UTILS)
$(DOCS_TARGET)code/%: $(CODE_TARGET)%
cp -pr $< $@
.PHONY: dist publish-dist
dist publish-dist: check-import check-package check-code publish-code toc \
$(DOCS_TARGET)dist/$(PROJECT)-code.zip \
$(DOCS_TARGET)dist/$(PROJECT)-notebooks.zip
DIST_CODE_FILES = \
$(DOCS_TARGET)code/README.md \
$(DOCS_TARGET)code/LICENSE.md \
$(DOCS_TARGET)code/setup.py \
$(DOCS_TARGET)code/__init__.py
check-install:
$(eval TMPDIR := $(shell mktemp -d))
@cd $(TMPDIR); \
$(PYTHON) -c 'import $(PROJECT)' 2> /dev/null; \
if [ $$? = 0 ]; then \
echo "Error: Installed $(PROJECT) package conflicts with package creation" >&2; \
echo "Please uninstall it; e.g. with 'pip uninstall $(PROJECT)'." >&2; \
exit 1; \
else \
exit 0; \
fi
clean-dist:
$(RM) -r code/__pycache__
$(RM) -r code/$(UTILS)/__pycache__
$(RM) -r $(DOCS_TARGET)notebooks/$(PROJECT)/__pycache__
$(RM) -r $(DOCS_TARGET)notebooks/$(UTILS)/__pycache__
$(RM) -r $(DOCS_TARGET)code/$(UTILS)/__pycache__
$(RM) -r $(DOCS_TARGET)notebooks/.ipynb_checkpoints
$(DOCS_TARGET)dist/$(PROJECT)-code.zip: \
$(PYS) $(DIST_CODE_FILES) $(CHAPTERS_MAKEFILE) \
check-install clean-dist
@-mkdir $(DOCS_TARGET)dist
$(RM) -r $(DOCS_TARGET)dist/*
$(RM) -r $(DOCS_TARGET)$(PROJECT)
mkdir $(DOCS_TARGET)$(PROJECT)
ln -s ../code $(DOCS_TARGET)$(PROJECT)/$(PROJECT)
mv $(DOCS_TARGET)$(PROJECT)/$(PROJECT)/setup.py $(DOCS_TARGET)$(PROJECT)
mv $(DOCS_TARGET)$(PROJECT)/$(PROJECT)/README.md $(DOCS_TARGET)$(PROJECT)
cd $(DOCS_TARGET)$(PROJECT); PYTHONPATH= $(PYTHON) ./setup.py sdist
mv $(DOCS_TARGET)$(PROJECT)/dist/* $(DOCS_TARGET)dist
$(RM) -r $(DOCS_TARGET)$(PROJECT)/*.egg-info
$(RM) -r $(DOCS_TARGET)$(PROJECT)/dist $(DOCS_TARGET)$(PROJECT)/build
cd $(DOCS_TARGET); $(ZIP) $(ZIP_OPTIONS) $(PROJECT)-code.zip $(PROJECT)
mv $(DOCS_TARGET)$(PROJECT)-code.zip $(DOCS_TARGET)dist
$(RM) -r $(DOCS_TARGET)$(PROJECT) $(DOCS_TARGET)code/$(PROJECT)
$(RM) -r $(DOCS_TARGET)code/dist $(DOCS_TARGET)code/*.egg-info
@echo "Created code distribution files in $(DOCS_TARGET)dist"
$(DOCS_TARGET)dist/$(PROJECT)-notebooks.zip: $(FULLS) $(CHAPTERS_MAKEFILE) \
clean-dist
cd $(DOCS_TARGET); ln -s notebooks $(PROJECT)-notebooks
cd $(DOCS_TARGET); \
$(ZIP) $(ZIP_OPTIONS) $(PROJECT)-notebooks.zip $(PROJECT)-notebooks
$(RM) $(DOCS_TARGET)/$(PROJECT)-notebooks
cd $(DOCS_TARGET); \
for file in $(EXTRAS); do \
$(ZIP) $(PROJECT)-notebooks.zip -d $(PROJECT)-notebooks/$$file; \
done
mv $(DOCS_TARGET)$(PROJECT)-notebooks.zip $@
@echo "Created notebook distribution files in $(DOCS_TARGET)dist"
# Add/update slides on Web pages
.PHONY: publish-slides publish-slides-setup
publish-slides: slides publish-slides-setup \
$(PUBLIC_CHAPTERS:%.ipynb=$(DOCS_TARGET)slides/%.slides.html) \
$(APPENDICES:%.ipynb=$(DOCS_TARGET)slides/%.slides.html)
publish-slides-setup:
@test -d $(DOCS_TARGET) || $(MKDIR) $(DOCS_TARGET)
@test -d $(DOCS_TARGET)slides || $(MKDIR) $(DOCS_TARGET)slides
$(DOCS_TARGET)slides/%: $(SLIDES_TARGET)%
cp -pr $< $@
# Add/update notebooks on Web pages
.PHONY: publish-notebooks publish-notebooks-setup
publish-notebooks: full-notebooks publish-notebooks-setup \
$(DOCS_TARGET)notebooks/custom.css \
$(DOCS_TARGET)notebooks/$(BIB) \
$(DOCS_TARGET)notebooks/LICENSE.md \
$(DOCS_TARGET)notebooks/README.md \
$(DOCS:%=$(DOCS_TARGET)notebooks/%.ipynb) \
$(UTILITY_FILES:%=$(DOCS_TARGET)notebooks/$(UTILS)/%)
publish-notebooks-setup:
@test -d $(DOCS_TARGET) \
|| $(MKDIR) $(DOCS_TARGET)
@test -d $(DOCS_TARGET)notebooks \
|| $(MKDIR) $(DOCS_TARGET)notebooks
@test -d $(DOCS_TARGET)notebooks/$(UTILS) \
|| $(MKDIR) $(DOCS_TARGET)notebooks/$(UTILS)
$(DOCS_TARGET)notebooks/%: $(FULL_NOTEBOOKS)/%
cp -pr $< $@
.PHONY: publish-index
publish-index: $(DOCS_TARGET)notebooks/00_Index.ipynb
# Add/update pics on Web pages
.PHONY: publish-pics publish-pics-setup
publish-pics: publish-pics-setup $(NOTEBOOKS)/PICS
cp -pr $(NOTEBOOKS)/PICS $(DOCS_TARGET)notebooks
publish-pics-setup:
@test -d $(DOCS_TARGET) || $(MKDIR) $(DOCS_TARGET)
@test -d $(DOCS_TARGET)PICS || $(MKDIR) $(DOCS_TARGET)PICS
$(RM) -fr $(DOCS_TARGET)html/PICS; ln -s ../$(NOTEBOOKS)/PICS $(DOCS_TARGET)html
$(RM) -fr $(DOCS_TARGET)slides/PICS; ln -s ../$(NOTEBOOKS)/PICS $(DOCS_TARGET)slides
# Table of contents
.PHONY: toc
toc: $(DOCS_TARGET)notebooks/00_Table_of_Contents.ipynb
$(DOCS_TARGET)notebooks/00_Table_of_Contents.ipynb: utils/nbtoc.py \
$(TOC_CHAPTERS:%=$(DOCS_TARGET)notebooks/%) \
$(TOC_APPENDICES:%=$(DOCS_TARGET)notebooks/%) \
$(CHAPTERS_MAKEFILE) \
$(SITEMAP_SVG)
$(RM) $@
$(PYTHON) utils/nbtoc.py \
--chapters="$(TOC_CHAPTERS:%=$(DOCS_TARGET)notebooks/%)" \
--appendices="$(TOC_APPENDICES:%=$(DOCS_TARGET)notebooks/%)" > $@
$(EXECUTE_NOTEBOOK) $@ && mv $(FULL_NOTEBOOKS)/00_Table_of_Contents.ipynb $@
$(PYTHON) $(ADD_METADATA) $@ > $@~ && mv $@~ $@
$(JUPYTER) trust $@
@$(OPEN) $@
# Index
.PHONY: index
index: $(DOCS_TARGET)notebooks/00_Index.ipynb $(DOCS_TARGET)/html/00_Index.html
$(DOCS_TARGET)notebooks/00_Index.ipynb: utils/nbindex.py \
$(TOC_CHAPTERS:%=$(DOCS_TARGET)notebooks/%) \
$(TOC_APPENDICES:%=$(DOCS_TARGET)notebooks/%) \
$(CHAPTERS_MAKEFILE)
(cd $(NOTEBOOKS); $(PYTHON) ../utils/nbindex.py $(TOC_CHAPTERS) $(APPENDICES)) > $@
@$(OPEN) $@
## Synopsis
update-synopsis:
$(PYTHON) $(NBSYNOPSIS) --project $(PROJECT) --update $(CHAPTER_SOURCES)
no-synopsis:
@echo Chapters without synopsis:
@grep -L '## Synopsis' $(CHAPTER_SOURCES) | grep -v '[0-9]'
## Python packages
# After this, you can do 'pip install fuzzingbook / debuggingbook'
# and then 'from fuzzingbook.Fuzzer import Fuzzer' :-)
.PHONY: upload-dist
upload-dist: dist
@echo "Use your pypi.org password to upload"
cd $(DOCS_TARGET); twine upload dist/*.tar.gz
## Binder services
# Make sure we have our custom.css in Binder, too
binder/postBuild: binder/postBuild.template $(HTML_TARGET)custom.css
cat binder/postBuild.template $(HTML_TARGET)custom.css > $@