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UC San Diego Center for Computational Biology & Bioinformatics

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  1. visJS2jupyter visJS2jupyter Public

    visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

    Jupyter Notebook 78 17

  2. VAPr VAPr Public

    VAPr: A Python package for NoSQL variant data storage, annotation and prioritization

    Python 34 3

  3. NetColoc NetColoc Public

    development of network co-localization tool

    Jupyter Notebook 13 6

  4. C-VIEW C-VIEW Public

    This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.

    Python 9 2

  5. cirrus-ngs cirrus-ngs Public

    Python 8 2

  6. gsia gsia Public

    Gene Set Information Analysis

    R 7 1

Repositories

Showing 10 of 26 repositories
  • NetColoc Public

    development of network co-localization tool

    ucsd-ccbb/NetColoc’s past year of commit activity
    Jupyter Notebook 13 MIT 6 3 0 Updated Oct 21, 2024
  • ASD_combined_network_analysis Public

    Notebooks from ASD-CHD combined network analysis paper

    ucsd-ccbb/ASD_combined_network_analysis’s past year of commit activity
    Jupyter Notebook 2 MIT 1 1 0 Updated Jun 20, 2024
  • Friedman_WGS Public
    ucsd-ccbb/Friedman_WGS’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 10, 2024
  • SBR_temp_bcbio Public
    ucsd-ccbb/SBR_temp_bcbio’s past year of commit activity
    0 0 0 0 Updated Jun 5, 2024
  • MitoProteomicsMethods Public archive

    Mitochondrial Proteomic Analysis for Yu/Pekkurnaz Project

    ucsd-ccbb/MitoProteomicsMethods’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 3, 2024
  • trem2_sRNAseq Public

    analysis of scRNAseq for Trem2 paper

    ucsd-ccbb/trem2_sRNAseq’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 21, 2024
  • VK2-vaginal-epithelial-cell-RNA-seq-analysis Public
    ucsd-ccbb/VK2-vaginal-epithelial-cell-RNA-seq-analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 9, 2023
  • visJS2jupyter Public

    visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

    ucsd-ccbb/visJS2jupyter’s past year of commit activity
    Jupyter Notebook 78 MIT 17 7 2 Updated Aug 15, 2023
  • C-VIEW Public

    This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.

    ucsd-ccbb/C-VIEW’s past year of commit activity
    Python 9 MIT 2 22 0 Updated Aug 1, 2023
  • pAML_StemCell_Methods Public

    All computational code for execution of analyses described in Methods

    ucsd-ccbb/pAML_StemCell_Methods’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 24, 2023
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