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.gitmodules
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[submodule "external/pipeline-align-DNA"]
path = external/pipeline-align-DNA
url = git@github.com:uclahs-cds/pipeline-align-DNA.git
branch = main
ignore = dirty
[submodule "external/pipeline-call-gSNP"]
path = external/pipeline-call-gSNP
url = git@github.com:uclahs-cds/pipeline-call-gSNP.git
branch = main
ignore = dirty
[submodule "external/pipeline-convert-BAM2FASTQ"]
path = external/pipeline-convert-BAM2FASTQ
url = git@github.com:uclahs-cds/pipeline-convert-BAM2FASTQ.git
branch = main
ignore = dirty
[submodule "external/pipeline-call-sSNV"]
path = external/pipeline-call-sSNV
url = git@github.com:uclahs-cds/pipeline-call-sSNV.git
branch = main
ignore = dirty
[submodule "external/pipeline-call-mtSNV"]
path = external/pipeline-call-mtSNV
url = git@github.com:uclahs-cds/pipeline-call-mtSNV.git
branch = main
ignore = dirty
[submodule "external/pipeline-Nextflow-config"]
path = external/pipeline-Nextflow-config
url = git@github.com:uclahs-cds/pipeline-Nextflow-config.git
branch = main
ignore = dirty
[submodule "external/pipeline-call-gSV"]
path = external/pipeline-call-gSV
url = git@github.com:uclahs-cds/pipeline-call-gSV.git
branch = main
ignore = dirty
[submodule "external/pipeline-call-sSV"]
path = external/pipeline-call-sSV
url = git@github.com:uclahs-cds/pipeline-call-sSV.git
branch = main
ignore = dirty
[submodule "external/pipeline-Nextflow-module"]
path = external/pipeline-Nextflow-module
url = git@github.com:uclahs-cds/pipeline-Nextflow-module.git
branch = main
ignore = dirty
[submodule "external/pipeline-recalibrate-BAM"]
path = external/pipeline-recalibrate-BAM
url = git@github.com:uclahs-cds/pipeline-recalibrate-BAM.git
branch = main
ignore = dirty
[submodule "external/pipeline-calculate-targeted-coverage"]
path = external/pipeline-calculate-targeted-coverage
url = git@github.com:uclahs-cds/pipeline-calculate-targeted-coverage.git
branch = main
ignore = dirty
[submodule "external/pipeline-call-sCNA"]
path = external/pipeline-call-sCNA
url = git@github.com:uclahs-cds/pipeline-call-sCNA.git
branch = main
ignore = dirty
[submodule "external/pipeline-generate-SQC-BAM"]
path = external/pipeline-generate-SQC-BAM
url = git@github.com:uclahs-cds/pipeline-generate-SQC-BAM.git
[submodule "external/pipeline-call-SRC"]
path = external/pipeline-call-SRC
url = git@github.com:uclahs-cds/pipeline-call-SRC.git