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notebooks

This directory contains the jupyter notebooks used in the projects.

Please delete this section and replace it with your own if you are using this template.

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It would be good to annotate here what each notebook was used for. For example, if you have a notebook called 01_data_cleanup.ipynb, you can write a short description of what it is here.

01_data_cleanup.ipynb: cleans up the data and prepares it for analysis. Includes celltype annotation and QC. Haven't done the clustering yet.
02_clustering.ipynb: clusters the data using the Louvain algorithm