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Setuptools license deprecation

Status: Open.

#3113 In tskit-dev/tskit;

· benjeffery opened on Mar 21, 2025

Move table transformation tests to tests/test_table_transforms.py

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Python APIIssue is about the Python APIIssue is about the Python API

refactoringIssue is about refactoring existing codeIssue is about refactoring existing code

Status: Open.

#2270 In tskit-dev/tskit;

· jeromekelleher opened on May 13, 2022

Method to "reverse" a tree sequence

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#2118 In tskit-dev/tskit;

· jeromekelleher opened on Feb 3, 2022

Make node-based caching optional in general stat framework

C APIIssue is about the C APIIssue is about the C API

Status: Open.

#2036 In tskit-dev/tskit;

· jeromekelleher opened on Dec 8, 2021

Add repr_html to the IdentitySegment classes and use in docs

documentationDocumentationDocumentation

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#2034 In tskit-dev/tskit;

· jeromekelleher opened on Dec 8, 2021

Deprecate the (new) _array methods by allowing both parent(u) and parent[u] access?

PerformanceThis issue addresses performance, either runtime or memoryThis issue addresses performance, either runtime or memory

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#2015 In tskit-dev/tskit;

· hyanwong opened on Dec 5, 2021

Cache metadata validation

PerformanceThis issue addresses performance, either runtime or memoryThis issue addresses performance, either runtime or memory

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#1907 In tskit-dev/tskit;

· jeromekelleher opened on Nov 11, 2021

Bump up C-python test coverage

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Status: Open.

#1869 In tskit-dev/tskit;

· jeromekelleher opened on Oct 31, 2021

allow new options to k-way stats

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#1648 In tskit-dev/tskit;

· petrelharp opened on Aug 30, 2021

iterating over count_topologies method never stops

bugSomething isn't workingSomething isn't working

Status: Open.

#1462 In tskit-dev/tskit;

· hyanwong opened on May 23, 2021

TreeSequence.as_dict_of_dicts() method

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#1294 In tskit-dev/tskit;

· hyanwong opened on Apr 2, 2021

Struct codec perf

enhancementNew feature or requestNew feature or request

PerformanceThis issue addresses performance, either runtime or memoryThis issue addresses performance, either runtime or memory

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#614 In tskit-dev/tskit;

· benjeffery opened on May 13, 2020

Deal with missing data in stats

enhancementNew feature or requestNew feature or request

Status: Open.

#287 In tskit-dev/tskit;

· petrelharp opened on Aug 6, 2019