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Issues list

Add node_is_sample array enhancement New feature or request Python API Issue is about the Python API
#2917 opened Apr 4, 2024 by jeromekelleher
2
Add support for MRCA based IBD enhancement New feature or request
#2896 opened Feb 1, 2024 by jeromekelleher
@jeromekelleher
2
Characterise propagation up the tree performance with seeking enhancement New feature or request Performance This issue addresses performance, either runtime or memory
#2792 opened Jul 12, 2023 by jeromekelleher
Add parallelism to stats API enhancement New feature or request
#2784 opened Jul 7, 2023 by jeromekelleher Python 0.6.1
Support windows in stats API that do not span whole genome enhancement New feature or request
#2782 opened Jul 7, 2023 by jeromekelleher Python 0.6.1
1
Add support for individuals to divergence_matrix enhancement New feature or request
#2780 opened Jul 7, 2023 by jeromekelleher Python 0.6.1
Require mutation parents for TreeSequence instantiation enhancement New feature or request
#2732 opened Apr 3, 2023 by jeromekelleher
3
Average arity of nodes in the trees enhancement New feature or request Python API Issue is about the Python API
#2723 opened Mar 8, 2023 by jeromekelleher
12
Add 'PBS()' enhancement New feature or request Python API Issue is about the Python API
#2717 opened Feb 27, 2023 by atongsa
1
9
table_collection.remap_nodes(id_map) method C API Issue is about the C API enhancement New feature or request
#2707 opened Feb 16, 2023 by jeromekelleher
1
Error if boolean passed as row index or slice? enhancement New feature or request
#2705 opened Feb 2, 2023 by benjeffery Python 0.6.1
3
Metadata size in tables enhancement New feature or request Python API Issue is about the Python API
#2637 opened Nov 15, 2022 by hyanwong
6
Tables.delete_younger enhancement New feature or request Python API Issue is about the Python API
#2635 opened Nov 9, 2022 by jeromekelleher
Numpy access to ancestral and derived state columns in TreeSequence enhancement New feature or request Python API Issue is about the Python API
#2632 opened Nov 8, 2022 by jeromekelleher
3
Mutation's "inherited" state enhancement New feature or request Python API Issue is about the Python API
#2631 opened Nov 8, 2022 by jeromekelleher
4
Tree.draw() and TreeSequence.draw() method suggestions enhancement New feature or request Visualisation This issue addresses visualisation
#2628 opened Nov 5, 2022 by hyanwong
Recursion depth exceed when generating large random trees enhancement New feature or request Python API Issue is about the Python API
#2626 opened Nov 2, 2022 by hyanwong
1
Make tqdm(ts.variants()) work better enhancement New feature or request Python API Issue is about the Python API
#2625 opened Nov 2, 2022 by jeromekelleher Python 0.6.1
1
6
Output name of file (if possible) when tskit.load() fails enhancement New feature or request Python API Issue is about the Python API
#2467 opened Aug 22, 2022 by hyanwong
@savitakartik
1
Garbage collection in ibd_segments, link_ancestors and simplify enhancement New feature or request Performance This issue addresses performance, either runtime or memory
#2461 opened Aug 10, 2022 by gtsambos
1
1
Add pedigree information to VCF enhancement New feature or request Python API Issue is about the Python API
#2451 opened Jul 29, 2022 by jeromekelleher
Check VCF output for conformance with VCF 4.3 and update version number enhancement New feature or request Python API Issue is about the Python API
#2449 opened Jul 29, 2022 by jeromekelleher Python 0.6.1
Add information about samples to VCF header enhancement New feature or request Python API Issue is about the Python API
#2447 opened Jul 28, 2022 by jeromekelleher
Routines to generate tree sequences deterministically rather than stochastically for testing enhancement New feature or request
#2430 opened Jul 22, 2022 by szhan
Provide TreeSequence array access to ragged columns enhancement New feature or request Python API Issue is about the Python API
#2426 opened Jul 21, 2022 by jeromekelleher
2
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