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support virtual root #205

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Merged
merged 1 commit into from
Dec 14, 2021
Merged

support virtual root #205

merged 1 commit into from
Dec 14, 2021

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@molpopgen molpopgen commented Dec 14, 2021

Add support for virtual root.
Update some internal code to use the virtual root.

@molpopgen molpopgen linked an issue Dec 14, 2021 that may be closed by this pull request
@molpopgen molpopgen force-pushed the support_virtual_root branch from bf326af to dd43e19 Compare December 14, 2021 20:54
* add Tree::virtual_root
* add 1 to the length of each array defining the tree structure
* RootIterator now uses virtual_root.
* Update PreorderNodeIterator to use virtual_root
* Add Tree::array_len to account for array lengths with virtual
roots.

Closes #170
@molpopgen molpopgen force-pushed the support_virtual_root branch from dd43e19 to 34b3174 Compare December 14, 2021 20:54
@molpopgen molpopgen merged commit 2391c9e into main Dec 14, 2021
@molpopgen molpopgen deleted the support_virtual_root branch December 14, 2021 21:01
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Update tree structures to use "virtual root"?
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