From fe996ca401054b2c7d205001520723c946f53d07 Mon Sep 17 00:00:00 2001
From: Benedict Geihe <bgeihe@uni-koeln.de>
Date: Thu, 6 Jun 2024 15:19:34 +0200
Subject: [PATCH] initial commit

---
 .gitignore                 |  3 +++
 LICENSE.md                 | 21 +++++++++++++++++++++
 Project.toml               | 19 +++++++++++++++++++
 README.md                  |  5 +++++
 SECURITY.md                | 30 ++++++++++++++++++++++++++++++
 src/TrixiAtmo.jl           | 13 +++++++++++++
 src/equations/equations.jl |  0
 7 files changed, 91 insertions(+)
 create mode 100644 .gitignore
 create mode 100644 LICENSE.md
 create mode 100644 Project.toml
 create mode 100644 README.md
 create mode 100644 SECURITY.md
 create mode 100644 src/TrixiAtmo.jl
 create mode 100644 src/equations/equations.jl

diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..7e53c4e
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,3 @@
+**/Manifest.toml
+run
+run/*
diff --git a/LICENSE.md b/LICENSE.md
new file mode 100644
index 0000000..220a3e3
--- /dev/null
+++ b/LICENSE.md
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2023-present The Trixi.jl Authors (see [trixi-framework/Trixi.jl/AUTHORS.md](https://github.com/trixi-framework/Trixi.jl/blob/main/AUTHORS.md))
+
+Permission is hereby granted, free of charge, to any person obtaining a copy  
+of this software and associated documentation files (the "Software"), to deal  
+in the Software without restriction, including without limitation the rights  
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell  
+copies of the Software, and to permit persons to whom the Software is  
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all  
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR  
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,  
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE  
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER  
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,  
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE  
+SOFTWARE.
diff --git a/Project.toml b/Project.toml
new file mode 100644
index 0000000..d1e2a7a
--- /dev/null
+++ b/Project.toml
@@ -0,0 +1,19 @@
+name = "TrixiAtmo"
+uuid = "c9ed1054-d170-44a9-8ee2-d5566f5d1389"
+authors = ["Benedict Geihe <bgeihe@uni-koeln.de>"]
+version = "0.1.0"
+
+[deps]
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+MuladdMacro = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221"
+Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
+StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
+Trixi = "a7f1ee26-1774-49b1-8366-f1abc58fbfcb"
+
+[compat]
+LinearAlgebra = "1"
+MuladdMacro = "0.2.2"
+Static = "0.8"
+StaticArrays = "1"
+Trixi = "0.7"
+julia = "1.9"
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..1f38495
--- /dev/null
+++ b/README.md
@@ -0,0 +1,5 @@
+# TrixiAtmo.jl
+
+**Note: This repository is still in its alpha stage and anything might change at
+any time and without warning, including the deletion of this repository
+itself.**
diff --git a/SECURITY.md b/SECURITY.md
new file mode 100644
index 0000000..2ebbac6
--- /dev/null
+++ b/SECURITY.md
@@ -0,0 +1,30 @@
+# Security Policy
+
+The Trixi.jl development team takes security issues seriously. We appreciate
+all efforts to responsibly disclose any security issues and will make every
+effort to acknowledge contributions.
+
+
+## Supported Versions
+
+The current stable release following the interpretation of
+[semantic versioning (SemVer)](https://julialang.github.io/Pkg.jl/dev/compatibility/#Version-specifier-format-1)
+used in the Julia ecosystem is supported with security updates.
+
+
+## Reporting a Vulnerability
+
+To report a security issue, please use the GitHub Security Advisory
+["Report a Vulnerability"](https://github.com/trixi-framework/TrixiShallowWater.jl/security/advisories/new)
+tab.
+
+We will send a response indicating the next steps in handling your report.
+After the initial reply to your report, we will keep you informed of the
+progress towards a fix and full announcement, and may ask for additional
+information or guidance.
+
+Please report security bugs in third-party modules directly to the person
+or team maintaining the module.
+
+Public notifications of vulnerabilities will be shared in community channels
+such as Slack.
diff --git a/src/TrixiAtmo.jl b/src/TrixiAtmo.jl
new file mode 100644
index 0000000..d80c0ee
--- /dev/null
+++ b/src/TrixiAtmo.jl
@@ -0,0 +1,13 @@
+module TrixiAtmo
+
+using Trixi
+# Import additional symbols that are not exported by Trixi.jl
+# using Trixi:
+using MuladdMacro: @muladd
+using StaticArrays: SVector
+using Static: True, False
+using LinearAlgebra: norm
+
+include("equations/equations.jl")
+
+end # module TrixiAtmo
diff --git a/src/equations/equations.jl b/src/equations/equations.jl
new file mode 100644
index 0000000..e69de29