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1. PSMCplus PSMCplus Public

   My implementation of the pairwise sequentially Markovian coalescent (PSMC) algorithm.

   Jupyter Notebook 6 3

2. cobraa cobraa Public

   cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequence.

   Python 4

3. mars mars Public

   msprime archaic relationship simulator

   Python 1

4. insufficient_evidence_panmictic_bottleneck insufficient_evidence_panmictic_bottleneck Public

   Jupyter Notebook

5. twin_peaks twin_peaks Public

   Some code and scripts for our analysis of ancient hominin demography.

   Jupyter Notebook