A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
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Nov 24, 2023 - Python
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zebrafish
Here are 12 public repositories matching this topic...
A vocabulary for describing Zebrafish Phenotypes
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Jun 18, 2025 - Python
Code for "Convergent Temperature Representations in Artificial and Biological Neural Networks"
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Feb 2, 2020 - Python
Software for performing offline tracking of zebrafish larvae.
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Jul 21, 2019 - Python
Zebrafish embryo fluorescence quantification
biology image-processing biological-data-analysis image-analysis fluorescence fluorescence-microscopy-imaging zebrafish
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Jun 5, 2024 - Python
A simple tool for zebrafish brain visualization.
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Jan 4, 2024 - Python
Napari plugin for spatial RNA quantification
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Oct 24, 2025 - Python
Zebrafish project for Champalimaud Research
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Jun 9, 2025 - Python
CV Zebrafish — a modular software tool to track and analyze zebrafish movements from high-speed imaging. It integrates with DeepLabCut outputs to compute metrics like fin angles, movement timing, speed, and behavior classification
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Oct 24, 2025 - Python
Toolkit for providing visual stimuli to zebrafish larvae and mice.
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Oct 9, 2019 - Python
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
gem genome repeats ngs genome-annotation genome-browser bowtie zebrafish mappability alignability danio-rerio tsslab
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Nov 9, 2018 - Python
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