A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

A shiny app for custom analyzes of preprocessed omics data

Automatic descriptor selection and volcano curve generation

This project visualizes Treatment-Emergent Adverse Events(TEAE) in a single graph.

Useful R functions for Multi-omics analyses

a polar representation of multiple volcano plots

Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee

Data for volcano3D package

Streamlit-based web application for scientific data cleaning, basic statistics, and interactive data visualization. Designed for researchers, students, and small labs to easily upload .csv or .tsv files, clean data, generate plots, and download results — all without writing code.

An npm package containing rna-seq plots

A Shiny interface to analyse Olink data

interactive volcano plots in shiny application (R)

Tuxedo-procedure-for-RNA-SEQ-analysis

Bioinformatics and statistical analysis of peer-reviewed papers in Dr. Martha Bhattacharya's lab at the University of Arizona. Overlaps with Itch, Endo, and Hippo repos

R package that visualizes MaxQuant output of activity-based protein profiling experiments.

RNA sequencing, bioinformatics, and data analysis involved in the Itch project for Dr. Martha Bhattacharya's Lab at the University of Arizona

R-shiny app for processing differential gene expression data

DESeq2 Analysis of Human Airway Smooth Muscle Cells